RnoINT0090113 @ rn6
Intron Retention
Gene
ENSRNOG00000027596 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:RGD Symbol;Acc:1562961]
Coordinates
chr3:33500925-33503685:+
Coord C1 exon
chr3:33500925-33501000
Coord A exon
chr3:33501001-33503557
Coord C2 exon
chr3:33503558-33503685
Length
2557 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TCCCACCTTCTTATTTCCAGGTT
3' ss Score
9.76
Exon sequences
Seq C1 exon
AAGTGGGAAGCTAAATAACCATTTAGAAGCTGCTATTCACGAGGCCATGAGCGAACTGGACAAAATGTCTGGGACT
Seq A exon
GTAAGTTAATTTATTTTTTCCATTATACTAGTTTCTTTGAAAATAAATTGCATTACCACATTTTTGTTAAAAATCTCTTGAACAGTGTGAAGAAACTCCCACAGCAATACTAAGATGCTAGGCAAGGGAAAGACCAGTGGCAGGATGGCATTTAAGGAAAGGGAGCCTGTGTTAGCTATGGGTTTGTTTGTTTTTTTGTTTGTTTGTTTGTTTGTTTTGTTTTAAAATCTGAGATGAGTAACTTCTGTTTTCTTAAAAAGGTTCATTAAGTGTCAGCAGCAATATGGTGAGGTCCCAGCCCCAGCTTTCTGCATTTGACTGTGAGTAGCAGTGGCCATCACTATAGACAAAATATTCAGCAGTGCAACATCACTCAATCTTTTAAAGAAAAAAATGTGAGATAAAAAGTTTAGTCCATTTTGAGGGTATATTAACTTCCTATTTTCCTTCTGCTGCCTTAAAATTAAAATGCTTTGTGCAAATTTTTGTTACTATTAACTAAACCCTGTGACCAAGGATGTCCTTTCTCTTCACATTCTGTCCAGCAGTTTGAGAGGAGAAGTATAAAGCTGTCTCTCCATCACATACAGACTCAAACACATAAATATAATTTTAGATGTTGCCAATGGTGTAGGTCATAGAAATGTATAAATCTAACCTTTGATTGGTTGGATGACACTGAGGTAAACTTGTAGGTCTAGGCCAATGGCCATCAACTCAGCATTCTCCAGACCAGGTGTATAGTACCTGTCAGTAGAGAGGATTAGGAATGAGAGCAACAGCAATTCTAGAATTGAGAGTTGCCAACAAAGATGAGCCACTAAGACTATAGAGATGCCCAGCCCTCTGCCGTGGCTCACTGGATTCTGGTGCCTGCTGAGGAAGGTGCTACTCTGCTCAGCCACTTCCAGGCCTAGCTCCCTGCTCTGTGGAGTGCCCACCACCCTTGAGACCTGGATGTGTTCCGTGTTCATATGTCCTGGATAATAGCGAGAGAGAAGGCATGAGGACGTGTCAGGATAGCTCCTACGAGCCCGAATGGCATAAACTCACGTGTGTTAGGAAATGCATTAAATGATTTACCTTCCCAAGAAAAAGATAAAAATGGATTGGCCTTCATTTCATTACTCTCTGCCTTGGGACAGTTAGCCTTTGTGGCCACCAGGCATTGGCACCTAATGAGGCAGTTTTGGAATGCACTCTTCAGAAGTGCTTTCTCCCTCACACTGAGCAGAGTGGAGATATATGGGAAGGGCATTGGAGTTGCCTCAACTCTCTTGAGAACCGAAAACTAAAATTTCTCATGTTTACAATGGTTTCAAAGATATTAAAGCACTTGTACACACACAAAACATTAAAAACATTGTATAGCTATTAAAACATGTTTTCAGGCCATAGTTGATCCACAAACTCCTAATTTGCTGTTATGGATAAAGACTCTTTCCTTGATTACAAACCTCCTCATTAATGAATTTTAGTTATGCTTGTTTTAAAAGGTATGTGTGGAAGGGGTCTAGAGAAAGAAGCAGTCTGGGAAGCTTAGAGCATTATCTTAAAGTTTTAAATACTATTTATAAAACAAATTTTATCTTTGACTAAAGACAATGTTTGGTGCTGTCTAAACTTTATTTAAATTGGCTCATTGTCGGTAATTGAATCTAGGTCTTCATGCATGTTTGGCAAGCATGAAGTTAAGTTAGTCTCCAATCCTTAAACATTATAATCTGAACACATAATTAAGCCAACTGGCTGTTTTCTTAGTCCTGTGACATCACGTTAACAGGTTAAAATCATCTGTGACAGAAGTATTTAGACCACGGGAATCGGTAAATACTACAGTGCATTTGTTTCCAAATGCTAGCTGTTTAACATTCATTTTGGCTACCACTTTAAGTCTACCCTGCCTTCTGGACCTTACTTCATTCTCTGACGCAAGTAGCCATGTTACAACTTGGGAGATCTGATTATTTACCCCCTGCTCCTCAAAATGTATGTGGTACCATTCAACCCTTTCTCAATGTGACATACAGGATCAAATGCCTCCAGTTCCTGTTTTAGTATATACCCGTGCTTTGTGGTAATTAGTCTCCCCTGTTTACACAAACTCAGACCTGCCAGTGAATGGCTGTGGCGTTCTATTGTCCGTGCCGATGCTTCTCATGAACAGACATCGCTGGACTGAGCGGCACGTAGATCTTCTGATCTTCGACACTTTGCAGTAGTTATAAAAATCTGCTCTGAAAAGAACAAATGAGTACTTGGTGTTGTCTTCCTGGCTGTCCGGGACACAGTGAGATAGTTGATCCAGGGATGTCTGCCTGGCAGTGCCCGGCTCATGTGTGCTCCCCTGTTCACTGGAGCCTTCTGAGTGTTCCCCTTCCCTTGTCGAGACAGTGTACGTACAGACTCAGGTCTTCACGACATTTTACAGTGTCTCAGGGTATAGCGATTGAAAGTGAAGCAGACTGTTTTCTGCCCAGTGTCTTTGTCCGAAGTCATTTGGTGTTTGTGATTTCAATCTTCCTGTTGTTTTTTTTTCCCACCTTCTTATTTCCAG
Seq C2 exon
GTTCACCAAATCCCGCAGGGTGACAGACAAATGAGGCCCCCCAAACCCAAGAGGAGGAAGATCTCCAGATAACAGAGAGTGTTCCACTGACACAGTGTTCATCAAAGGAGCATGCACAGACACACCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027596:ENSRNOT00000034632:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0085512=PWWP=PD(22.0=69.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]