MmuINT0096254 @ mm10
Intron Retention
Gene
ENSMUSG00000036792 | Mbd5
Description
methyl-CpG binding domain protein 5 [Source:MGI Symbol;Acc:MGI:2138934]
Coordinates
chr2:49313650-49319690:+
Coord C1 exon
chr2:49313650-49313725
Coord A exon
chr2:49313726-49316387
Coord C2 exon
chr2:49316388-49319690
Length
2662 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTCCCCAACCTTATTTCCAGGTT
3' ss Score
8.04
Exon sequences
Seq C1 exon
AAGTGGGAAACTAAATAACCATTTAGAAGCTGCTATTCACGAGGCCATGAGCGAACTGGACAAAATGTCTGGGACT
Seq A exon
GTAAGTCAATTTATTTTTTTCCATTATTCTAGTTTCTTTGAAAATAAATTGCATTAACACTTTTTTTTTGTTAAAAAAATCTCTTGAACATTGTAAAGCAACTCTCATAGCAATACTAAACTGCCAGGCAAGCAAAAGACTGGCGGCAGAAAAGAATTTAAGGGAAGGGAGCCTGTATTAGCTATGGATTTTTTTTTTCTGAGATAAGTAACTTTTGTTTTCTTAAAAAGGTTCATTAAGTGGCAGCAGCAGTATGGTGAGGTCCCAACCCCAACTTTCTGAGTTTGACTGTGAGTTGCAGTGACCATCACTATAGCCAAAATATTCAGCAATGCAACCTCACTCCATACATTAAAAAAAAAAAAAGTAGGATTAAAAAGATTGGTCAATTTAGAGAGTATATTAACTTCTTATTTTCCTTCTGCTACCTTAAAATTGAGATGATTTGTGCATATTTCTGTTACTAGTAACTGTAAATCTCATGATTAAGGAAGAGATGTGCTTTCTCTTCACACTTTGTTTGACCTATGCATCCATTAGTTTGAGATGAGAGGTATAAAGCTCTCTCTCCATCACATACAGACTCAAACACATAAATATAATGTTAGTAATCTCTTTAAAATAAGCATTATTTCAGGCTGCATAGCAATGACAAGCCATTTACTTAGGCCATCTGAAACTTACAACCCATCCATTGGCTGCTTCATGATGGGTAACAGTTAGGGAGCCTCAAGATGTTGCCATTGGCACAGGTCATAGACATGTGTTAATCTAACCTATGATTGGATTTTGCCAGGAAACCTAAGTTTCCTGGTAAACTTGTAGCCATCAACTACAGTATCCTCTAGAACCAGGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGTCTGTCAGTAAAGAGGATCAGGAATGAGAGCAACAATTCTAGAATTGAGAGTTGCCAACAAAAATGTGCCTGCTGCTGAGCCTGTTGAAACATAGGCCATGGCTCACTTGATTCTGGTGCCTGCAGAGGAAGGTGTAACTCTACTTGGCCACTTCCAGACCTAGATCCCTTCTTTGTGGAGTGCCCACCGCTCCTTGAGACCTTGATGTGCTCACCCCATCTTTGTATATCCTTTGCGTCCTGCTTGATAGTAACGAGAGAAGGCATGAAGAAATGTCAGTGTAGCTCCTATGAGCTCAGACGTCCTCAACTCAAGTGGGTGTGGAAATGCAGTTAATGATTTACCTTCCCAAGAAAAATATGAAAATGGGTTGGCCTTCATTTCATGCCTCTCTACCTTGGGGCATTTGGCCTTTGTGCCACCAGGCATTGGTACCTAATGAGGCCATCTTGGAATGTATTCTTCAGACGTGCTTTCTCCTTTGCACTGAGCAGAGTTGAGCCATGTGGGAAGGGGCACTGGAGTTGCCTCAACTCTCTTGAGAACCAAAATCTAGAATTTCTCATGTTTACAGTGGTTTCAAAGGTATTAAAGCACTTACACACAAACCTGTTTACAGCTAGTAAAACAGGTTTTCAGGCCATAGTTGATCCACAAACCACTAATTTGCTGTTGTGGATAAAGACTCTTTCCTCAATTACATAACTCCTCATTTCTGAATTTGTGCTTGTTTTAAAAACATGTGTGGAAAAGGGTCGGAGAAAGAGGCAGTCTGAGAAGTTCAGAGCATTATCTTAAAGTTTTAAATACTATTTGTAAAAAGAATTTTACCTTTGACTAAAAGCAAACAACGTTTGGTGTTGTCTAAACTTTATTTTAATTGGCACATTGTTGGTAATTGAATCTAGGGCTTCATGCATATTTGTAAAGCACTTACAGTTAACTCAGCCTCCAACCCTTAAACATTATATTCTAAACACATAGTTAAACCAACTGATTGTTTTCCTAGTCCTGTGACATCATGTTAGTAGGCTAAAATCATCTGTGATAGAAGTATTTAGACCATGGGAATTGGTAAATATTACAGTGCATTTGTTTCCAAATACTAGCTGTTTAACACACAGCTACTCTACTCTGCCTTCTGGGTCTTACTTTATTCTCTGACATCAGTAGCCATGTTACAACTTGGAAGATCTGATTGTTTGCCTTCTGCTCCTCAAAATGTATCTAGTACCATCCAACCCTTTCTCAATGTGACACACGGGATTAAATGCTTCTAGTTCCTTTATTAGTATATACCATTGCGTTCTATTAATTACTCTCCCCAGTTTACACAAACTCAGACCTGCCGGTGAATGACAGTGATGTTCTAACATCCATGCTGATTCTTCTCATGAACAGACATCCTTGGACTGAGCTACATGTAGCTGCTCTGATCTTTGACACTTTGTAGCAGTTATGAAACAAGGGGTGTTAGGAGAAGAACAAACGAATACTTGGTTTTAGCTGATTGAGGGAGCTCTGCTGGCTCAGACATGCTCCCCTGGTGAGTGGAGTCTTCTGGGTGTGTCTTTTACTGCTTCCCATCCCTTTTTGAGGCAGTGTTCCCACAGACTCAGGTCTTCATGATATTTTATAAAGTGTCTCAGGATATAGTGATTGAAAGTGAATCAGACTGTTTTCTGCCCTATTTCTTTGTCAGAAGTCATATGGTGTTTGTGATTCCAATCTTGCTGTTGTTTTTTCCCCAACCTTATTTCCAG
Seq C2 exon
GTTCACCAAATCCCACAGGGTGACAGACAAATGAGGCCCCCCAAACCCAAGAGGAGGAAGATCTCCAGATAACAGAGACTGTTCCACTGACACACAGTGTTGATCAAAGGAGCATGTACAGACACACCTGTATGTGGGTATTGATATGACCACCGTTAGATCAATCTGTAATCTACGGCAGATAGCTACCACCACCACAGGGCCCTAAAGGGAACAGCAATGGAGACAAGCATTGATCAGGAAGGAAAATGAATGTCAAAAGCAAAACAACAATCAAAATCCCTGTATGAACAAAGCGGTAAATGGTCACGTGATCGCTGAGAACGTTTTCTATTGTACTAAAATTGTGATTATAAGAAATAGTCCAAATGTTTCTGGAGAATTTTCAGTGTTGTATATAGAAAATACAGAATTTCATGGCGATATTAGAAATGTAAATATTGTACAATATTGTCATGTACAAGCATACTTAATGCACACTTTATCTTTTATTGTACAAAGAAATAGTGTACAAAAATCTTTGGTTTCTATGGAGTACACCTACCAGAGACTACCAGTGTAAAGTGATAAATAAAAATACAACCTAAATGCTTTTCTATGATAATGTAAAAGATGCTGGTTTTGTATTTAATGGCAGAGGAAAGGCATGGTGATGTAATACACACATCATGGCATACACTGCACACCACTGAGTGTTCATTTATAATGTCTCTTTAAACGGCCCAGAAACACTAGACTGAGTTTTGGGTATCTAGGAAGTCTCCAAATTTCTGAAGAGAGAAATGCTCGTGAGCCTAAATCAAGGATTCAGGACCTCAACCATTTGTTGCATCGTTATTCTTTGACAGTTTTATACATTTCTATAATGAGTTTGAGCCACTTCCACTCCTCCACCTGCTCCTTCATCTCCTCGCTCTTGCCAGTAAGTGTTCTCCTGCTTTGGTGTGTCCCTGGGCCTGCCCTGCAGAGCTTGATCAGAACATGTGGGGGTGGCGGGGTTGTACTGACAGCACAAGGGCAACTAGTCTCTGGCTACACCAGGAGGAAAAACGAGGAGGCTACCAAGCAATCATTAGCTGCTAACAGTCACTCAGGTGGAGTGGGGCCATGTGGGCCCCTCCACCATCCATGGGGAAGCAGTGATATGCTCAGTTCTGTGTGTGTGTGTTGTGCAGATAACCACAGCTGCAGTGATTTCATGGGTGAGATGGTCCTGACACGTGCGGAGCACACTGGCCTAGCCTCTGGTCTTATCATCTCTCCACCCCCTTTCCTACCTTGGAAAGGTGATATGGATCTCCCATTCAGGGCACTTTTAAAACAGAATAGGTTTTATAAAATTTAAAAAAAAAAAAAACTTAGATGAACTACTTTACTCAATCATTTATTTAGTAAGTCTTTGATGGCTACCTGTTGATCGTTTTCTGTCAGTGATGCTCAGAATCAGATTTTGTTTGTTTGGGGGTTTTTTGCATACAACATCTGACAAAGTAAAACTTGGTAAAACTTCTCATTTCTACACGTGGAGACAGAAGCGATACTTTGAAACCATCTACAGACAGAAGGATGATGACAGTTCAGTTTTTCCTTTTCAGAGTGGAAACATAAATCAAACCACATTTTATATCATTCGTCAGTACCAATTTACCCAGAAGTGTGAAAGTGGCTTGCAAAATTACGAGCAATGGTAATTTTTATTAGTATTATGTAACATATCAGATTTATTTTATTTAAAGAATTATTTATATCATTCACAGATTATTTTTATATATGCATATATATTAATGTGGCTGAAATATGTGGGTTGAGTCTTATTAAGCAAATTATTTATGTTGCATTAAATAAGAGAAATGTGAAATAAATATAGAAAATTACTCCATTACAAGTATACAGACTTAAAACTGAGCGCATAAAGTACAGGGTAATGATCAATAACCAAGGACAGTGTATTGTGCGTGATGGTGCCATAAGCAAAATTTCAGACAGCCTCAGTTAGAGATTGTCAAAAGAAAGAATTTGTTATCCCTCTTTCTTGGAATCAGCCTCCATCCAAAACCCCAGCGAACACTGGCTGTCCTCTAGTCCTGCCCTCAGCTGCTGGGACATTGTCCCCTACCAGGCTCTGGACTCCAAGATGCTATTCCTTTCTAACCCTCCTCCTCCTAAACTCCACAGTCCCATCAGGTAACAGTGCTCCAGGAACTCAAGATAAAAGAGACAAAGCTCAGAGTACACAGGACATACACACAAGCGCACACACACACACACACACACACACACACACACACACACACCACCCAGGTCCCCCCCCCCCTTTTTTTTAAGACAAGGTCTCTCTATGTAGCTCTGGCTATCCTGGAACTTGCTATGTAGACCAGGCTGGCCTGGAATACGTAGAGATCCTCCAGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGTGCCACCACACACATCCTCCACCAGGCTCACTTTTGATAGCAAAGTTCAGAGATTTCCTCTCAGATATTTCTGTGTCTTGGTGTCTGTTCTGTCCTCACCTTGACCCTTATCTTCAAGCCTGGAGGAATGCAAAGAGCTGCATCAGAACTTCCTTCCATGGTACGTTCATTGTTCATTTTGTCCTCTGCGAAGGTGAGATGAGTATCAAGAGGGAGAGTCTCGTGTGTGGTCTGTTCTATGTGTGCTTCCCAGAACTGTGAAGGGGCAGGAAATGAATTACATTTCCTTTGGTAATTTTCCTCATTTATTTCAAATGAGGAAAACTTAACTAAGAAGGCCTTGTGTCATGTAATGGACTTGTGTTTGTTACAGGTTGATATATTTGGTCTCTTTAAGCAACTATTGTCTTGTCTTGTTTTGTTTTGTTTTGTTTTGCATCAGCCTGCTTCATCTTGTTTGTGTCCATAGCTGTGTGTATTCTCAGATAGACACGGGCGTGTTTGTATGCCTGGTGGGTGTGCATGTGTGACCTGTTGCTGTACAAAAGACGAGTCAGCCTTTGCCCTTCCATCTTTACTCGGCCACCCCTTCTTTGTGTATTTCCATGCGCACCATGATATACTTTGCGTCAGGAAACCTTATGAATCTGTCTCTGCCGTGACCTCACAGTTGCTCGTGGCTTTGCTGCGGGTGCACAGTGAGGCTGAGCCTGTTCACACGGGGCTTCCTCTTTCTCGTACACTTCCATGGCTTCAGATAAGCAGGGAATGTAAATACTGTCAGGATTTTGGGTCGTGCAAAGCTGTGACACTTTTTAAAATGTTATATCTACCTTACAATTAAAAAACTGGTAACTCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036792:ENSMUST00000047413:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0085512=PWWP=PD(22.0=69.2)
A:
NA
C2:
PF0085512=PWWP=PD(33.9=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types