HsaINT0100393 @ hg19
Intron Retention
Gene
ENSG00000204406 | MBD5
Description
methyl-CpG binding domain protein 5 [Source:HGNC Symbol;Acc:20444]
Coordinates
chr2:149267629-149271044:+
Coord C1 exon
chr2:149267629-149267704
Coord A exon
chr2:149267705-149270438
Coord C2 exon
chr2:149270439-149271044
Length
2734 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTCTACCTTTTTATTTCCAGGTA
3' ss Score
10.78
Exon sequences
Seq C1 exon
AAGTGGAAAGCTAAATAACCATTTAGAAGCTGCTATTCATGAGGCCATGAGTGAACTGGACAAAATGTCTGGGACT
Seq A exon
GTAAGTTAATTTATTTTTCCATTATACTACGTTTCTTTGAAAATAAATTGTGTTACACTTTTTGGTAAAGTCTCTTGAGTATTGTCAAACAACTCACATAGCAATACTAAATTACTAGCCTAGAAAAAAAAGACAAATATTAGAAAAGATTCAAAGTCATTTAAGAAAAAGAAACCTACCACATTAACTATGTCTTTCTTCCTGAGATAAGTAATTTTGTTTTGCCACATAACGTTCGTTTAAAATATGAGCAGCAAAATATTGAAGTTCAAACCACAGCTTTCTGCACTTGACTCTGTGAATGGCCATGGCCATTACTGTTGCTTATATATGTAGTAATGCAAACTTTGTTCTGTCCATTGAACCAAAAAGACAGTGGGGTCAAGATCAAGAGTATATAGACCTCTCATATCCCATTTTTATTGAACTGTGCATATAATAGCATTGAGTGTGAGAAGTTTAATCGTTATGCTCCAGTTCACATATTGACTGATGTAAATACTTAAAATATAATTTTGGTAATCTGTTAAAAATGTGAATTGTCTAAGGCTATTTAGCATGAAAAATAATTTCTTTTATTTGACCTTATGTTACAAGGTTATCTGAATCCCAACAAACCATCCAATGACAATTGAATGATGGGATTAGTATAGGTTTTAGAGATTTTGTAATCCAACCAAACCATCATTTCGCAGATGGGTGAATTGAAGCCCTGAGACATTAAATTTCCTGATAAAATTATAGGAAAGATCTAGATTGGGGATTATAAACTCAAATGTTTTCTAGGGCCAGGCAAATTATATCAGTAAGTAAAGTGGGCCAGGTATGACAGCAGTTGGAATGGATGAGAAATGCCAGTGAAGATCCATGGGTTAGGGTAGGCTACCAATCTAGAGGCTCAGCACAGTATAAGCCATTACCCACTTGAGTCTGGTGCTGGTTGAGGAAGGGTTGCTCCACACCAGGGCACAGATTCTTTCTGTATCTAGTGACCACCTCTCTTAGGACCTCAGAGTGCTCCATTATATCCTTTGCATTTTGCCTTGAAGGTAAAAGAAAAGAGCGTGCTAAGAATACTGCCAGCATAGGTTTTATGAGCCAGACCTGGAAGCTCATTCTGTTGACTTTCCACTGACCTGACCTAATCATATGGCCTTCTTAACTCAAGTAGAATAGGAAATAGAACATAGAATGTGCCTGCCCAGGAAAAAGAGAAAATGAGTTTGGCCATCATCTCTCTAGGCTCTGCCTCGGGACATTTGGTCCTGGTGGAAATCAGGTAGTTGAGAGTAATAAGGATCAGGGCAACCTGGGAGTCATGTGCTCTCTCCAGAAGGCATTCCTTCCATGCTCCAGCAGATCTTAGACATCTGGGAAATTGTGTTCATGTTGCAAGATCTTTCCATTTTTCATATAAAACTAGAAGTCTAGAAGTAAATTTTCTCATTTTTATGGGTTGACAACTGTTTTAAAAAATATTAAAGTGCCATATGGCTAAACAAAATACCATTTCAGCCACATTTGGTCCACAGATTACTAGTTTGCAGTCTCAGTTATAAAAAGTTTCTTTCCTCAGTTATAAAAAGTTTTGGCTCTTTACTACAGAATAGTTGTTTTAAAAAATGTGTATGGAGAAGATTAGGAGGAATAGGCAGATTGAAAAACCCATAAACATTATTTAAAATTTTTAAATATTATTTTTTAAAAGCATTCTGCATTTGAGTCTGGATAGCATTGCCCTTTGCTGCTGTCTAAACATTATTTTTAAGCATGTAATTGAGCCAACTTGTAGTGGATCCGGAGAGGCGATTGTACTCATCTCTTCCTAATTCTAAGTCCTGTGACATAAGGTTGGCCAGGGTAAAAGTTTTACACCACAGAAACTGGCAAAATGCTAAAATGGACTTGTGTCGAAATGCTGATTAAGCATTTGCTACACCATTGCCTTGGGTTCATCCCTCCTCTCCTAGGTCTTGGACCTTGCTCCTTTCCACCAATAGCTACAAGACAATTTGATCACTCCCTCCTCCAAATTATACCTGCTATCTAATGCTGCTCAGCCACTGCTCAATCTGATGAACAGCACTAAATGTTGCTAGTTCCTGCATTAGCACATAAAGAAAGGTGAGTTGTATTAACTGCTCCTCCCAGACTACACAATTTCAGATCTGCCAACAGATGATAGTGGTATTCTCTTTTCCATTTTGATTCTTCTTATGAACAAACATCCTTGGGCTGAGCTATGTGTGCATGTTATTATAATTTGTGACCCTTCCTAGTCATTGTAAAATAAGTAGGGTAACAAAGTGAGGGAAAAAAAGGGGCATGTTTGGTGTGTAATTATTCATTCTTCCAGGCTGTAGTGAAATTGGTGATCTAGGGTCTCTGACAGGGAAGGCTTTATTTTTGTTTTAAATGGACAATGGGGGTAACAACTGCACATTGCATTTCCCATACTTGATTTTGTCCAGTTCATCCTTTGTTTTCCACTGTCTATTGGCACCCGCAGAGTGTTGCACTGCTTATCAGTTTCTAGCATTCTGCATTCTCTGTAGTGACTGTGGGCACACTGACATCTGGGGTCTTGGTAAACATTTGAAGTGCCTCAGGATATCAGTAATTGAAAGTGAAAGCCAGAGTCTATTCCCTACCCTGCTCCTTTGTCAGAAATTTTATGGTGTTTGTGATTTCATCCTCTGTTGTTGTTGTTTTTTTTCTACCTTTTTATTTCCAG
Seq C2 exon
GTACACCAAATCCCACAGGGTGACAGACAAATGAGACCCCCCAAACCCAAGAGGAGGAAGATCTCCAGATAACAGAGACTACTCCACTAATGCGCAGTGTTTATTAAAGGAACATGCACAGATGTATCTGTATATAGGTATTGATATAGCCACAGTTATATCAATATTTAGACTATGGCAGATAGCTACCACCACCACAGGGTGCTAAAAGAAACAGTGATACAAAATTTTTTTGATCAGGAAGGATAATGAATGCTGGAAAAGCCAATCAAAGTCTCTGTGTGATGAGAGTGATCAATGGTCAAGAGATTACTGAGAAACTCTTTTTCTATAATACTAAATTGTGATTATAAGAAATAGTCCAAATGTTTCTGAAGAATTTTCAATGTTGTATATAGAAAATACAGAATTTCATGGTGATATCAGAAATGTAAATATTGTACAGTATTGTCATGTACAAGCGTACCTAATGCACACTTTATCTTTTATTGTACAAAGAAATAGTGTACAAAATTCTTTGGTTTCTATGGAGTACACCTACCAGAGACTACCAGTGTAAAGTGATAAATAAAAATACAACCTAAATGCTTTTCTATGATAATGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204406-MBD5:NM_018328:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0085512=PWWP=PD(22.0=69.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)