GgaINT0050132 @ galGal3
Intron Retention
Gene
ENSGALG00000007841 | DNAH7
Description
NA
Coordinates
chr7:10738834-10742897:-
Coord C1 exon
chr7:10742711-10742897
Coord A exon
chr7:10739028-10742710
Coord C2 exon
chr7:10738834-10739027
Length
3683 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TGGTTTAATTTATTTTTCAGGAC
3' ss Score
9.84
Exon sequences
Seq C1 exon
GGAATGGGAAGGAAAGCTGTTGTTACTGCAGGAGATCCTGGATGAATGGCTGAAGGTTCAAGCTACTTGGCTTTACTTGGAGCCAATTTTCAGTTCTCCTGACATCATGGCTCAGATGCCTGAGGAAAGCAGACAATTCAGTACTGTTTTTAAAACATGGAAAGACTTGATGAAATCAGTTTTTCAG
Seq A exon
GTCAGTGTCAATGTCTTAAGAACATGGGTTGAATCTACACTATGTACTAGAAAATTGCTTCTGATAGCACGGTAATCAGTTTTCTGTTTCTTCTTAGCCCCATTTCTTAGATTCTTTTAAAAATAATTTTGTAGAATTGTTTCATATTGAATCATAGAAGCACTGCTTGGGAGGGATCACTGGGGTTCAGCCTGTCTAACTTCTGGCTCAAAGTGGAATGCTTGCCAGCACTAGATCAAGCCAGCCACAGCTTTGTTTTGCCGTGTTATGGAAACTTCGAAGGACAAGGATTCTTTGGAGGTTACCTCCAGAGACTTTGATGTTGTACTTTGTAATGTCTAAGCTGAACGTCCTAAGCAAATATCTGTGCCTGTTGTTCCTTGTCCAGTTGGCACTATGGAGAAGAGGTTCGGTCTGTTGTATTTCCAGTTTGTTGGTTGCTGTTTTATTTTTCATTCTGTTTTGTTCTTTGATTGTGCTTCAAGTAGTTCCTGGCTTCAGTTAAATTTAACATGAATTTTCTCCTCACCCTTTCTTTCCTGCTGTGTGTACACTCTTCTCCCTCAGCTGTGCCCCTCATGCTCTTTTTCCCTTCTTCTAATGTAGAAGAAAAATCAGAAACTTATCAAGATGATGTGAAATCAGCAGTATTTATTCTAGGGAAGAATCAGATAAAAAGAGTAATAATAAAAAGGCAAGAATTTCAGAGCTGTGTTGAGCAATATGTTTTTAAATGTTGTGTCTGCTGCAGTATCTCTTCTAAGAAAATCTTCTAATTTAAATACTTGGTGCTAATCAGTTGTGAATTATTTTTGAATATGATATATCTTATCACTGGTAGAAAACAGAGTTATTTTTTGTTTGTGCAGGAAATTATAAATGCCAAAAGAGGAATGAACCAAAGCTCATTTTCTCTAAACAAGTAGACCTTGTGCTCCAGAAGATGGCGCTCTACTTCCACAAATACACTGTTTCCATTTTCTATCTTGAGCATTGTTCCTCGGTCAATATGAATGGTCTTTCTTTAATAAGGCAAACTCGAGTCTGCTTTTTGTTGCATTTAAATGCTGTATAATAAAGTTGTTGTGAGAGGAATCAAAATGCTTCCTTCATTTCCTTAGCTTTCCCTCACCAACTTGAGTAATCATTTATTATCAATTCATTAACAATACTGAATTTAAGTAAAGCACATTAATGAGGGTTAAAGGATTTATTTTCCGCTTGTCTTAAATTAAAAAAATAAAAAATGAACACCCAAAAACTAGAATACAGAAGCATTTCTATGTCTTTTGAGGAAGAAAGAAAAGAAGAAGAAAAAGAAATCCAAGGCTGCAACCTGTGATGCGTTAGAAATGATATTTGAAAACTAGAGTTAGTAATGTCCTTTTAGCAGGGTATTATAAACATGCTAAGAAAGGAAACAATACCATTCTCTGTTGCACTGGTTATGCATTACAAAGTGTTTTATAAAACAGATGATTAACTGCATTTGCATGCTGACAGATTAATTATCTACGTATAGGTGAAAAATGTAAGTACTCAATTTACTTCATTCTGTTTTGGTATGATGCAAGAGGGAAGTAACAGAAGGTAAATGTATTTCATGTACAAGAGAATGCCGCTTATTATGTTAGAGGGGCACAACCTATGAGGATTAATTAGATAAGCATACAGTTATGTTTTTTGTTGTTCTTGTTTATTTGTTTTTGGTAGATTAGAAGCATATTTGCATCATGAGCAGGCAATCGAACCAAAGCTAAGTGCAAACTGCAAATCATTTCAATACGTTATGAGTTTTTGAACTGAAGCTGAGTTTGCAATTTGTTATTGAATACTCCAAACTGAAGCCAAACAGCAGTCAGGATGCTAGATCAAATGTGTGTTGTTGCTCTATAAGGAATTCGTTTCTCATAGATACGTTCTGGGCTTTGCACAGCAGTCTTGTCTCTCTTCATCTGTCACTGCAGCATGACCAACCCTTCTGTCCTGTGATATTGTGTAATTCTGCAAACCCCATCAGGAACTTTTTTTGAATGAGACATTCTGTTTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTGGCTACATCTTTGATTTTTACTCTCACTGCTGGAGTATTTTACAGCCAGAAGTTCTTACATGTCCTCAATAGATTGATTAGCCTGAAATAGTTCCTACTGCTTTCTTTGGTGTTTGTCATTGCTTAGTTACTTGTGTACTTATATTTTTTTCCACTTTAATCCTGGTCATGTGTAGTATGTAGTGCTCTTACAGGTACAGACTCACTGGACAGAACGCACACTAACATTTCTGGTTGTCTCTGTTTCCTTCTCTTCTGTGGCCTCAATCAAATTCCAGGGAAACACGGGTGGCAAAGGAAAAGCCATTGAAGTGTGTTCCAAGACTAATCACTTTGCTTTCCCTTCCTGGGATTTTGTAGAACTTTATGTGTTGTAACAAGAGTAAGCTTGAATCAATTGAATGGTTAGCAAATCAGGTAATGTACCAGTATGGGCCTGAACAGCACAGTGCTAGAATAAATTCAGTCATACATAAACTCAAGCTCACACAGGATCTAAGTAGAAGCATTTGTTTAACTTGACTTCCACTGTCATAAATCTGCAAATCGGGATTTCCTTCTTGGAAATGTCTCTCATTTTGCCACAGAAATCCCATACTTGGTGAATGGCTTCAAAAAGTTAATGGAAATTAGGCTATACACTGGTCACAAGAGATATTAAATGCCAGAGTTAGATGTTCAGACAACTGTATTTCTTTCAGGCTTGCTTTTTAGCTTGATAATCTTAAGGTCTTTTGCAAAAAACTTTTTTTTTTTTTTTTTATTTGTATTAATTGAAACAACTTCCAACTCATGCAGTAGGTTTTTTTTTAAGCACTGAGGTTCTTTTCACTGAAGGTGTTAATTTGAAAAGCAGTAAAGCAAAAGCTAAAAGATATATGTTGTTATCTACTCAGTGTAAGAATATAAAAAACTGTTTATCAAGCAGTGTATCTTAGCATGTGTTATTCAGGTGCTATCATAAAAGGAAATAAAAATATAATTTGTGATACTTCTAAAGAATCTAACTTTTCATATTAGCAGAAATCTTCAAAGATGTCTCTAGCTTGTGAATGTTTTTTTCAGAGCATATGACTAATTAATGTTGGTACTGAAGATTTACAGATGGTAGCAGTTCTCCCTACTTGCAATTTTGCCATCTCAAATCAGGATCTTGTGCATAGAAGTATTTTATATGAGAAAAGAGATCATTTTTTTTACACTGAAATTTGATAGATTACCAGATAAAGTGTGTGTCACTATTGTTGCCATAAAAATATACTTAAAAATTCATCAGAATCTTTTGCTGGTTCTTTTTGCTTAATTATATGGGTATGATTATGGGGTAGATTGCTGTTGCTCCAACAAAATGACAGGAATCACTCTGATGAATTGATTCTCTTTTGAAAATTATTTTCAGAGATAGTAAATGTAGTTTAATGCTGACTGCCTTAACTATTTTTCTAGTGAAGCCAGAAACTGAAGATTATAAATTATAATTCTAGCAATTACCGAGTAAAGAAAAGTATGAAATAAAGATAAATTTTGCTCAAGACGTTTTGTACAGCGTTGAGTGAGTAGACATTAATGTTTTTATCTGGTTTAATTTATTTTTCAG
Seq C2 exon
GACAAACATGTGCTGGCCGTGGTAACAATAGACAAGATGTTGGAAAAACTGAGGAAGTGCAATGAATTTCTGGAGATAATTCTCAAGGGACTTAATGAATACCTAGAGAAGAAGCGCCTGTTTTTCCCCAGATTCTTTTTTTTATCTAATGATGAACTCCTTGAGATTCTTTCAGAGACCAAAGATCCTACCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007841:ENSGALT00000012727:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(15.0=100)
A:
NA
C2:
PF083938=DHC_N2=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]