GgaINT0050195 @ galGal4
Intron Retention
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34656692-34657296:+
Coord C1 exon
chr7:34656692-34656778
Coord A exon
chr7:34656779-34657222
Coord C2 exon
chr7:34657223-34657296
Length
444 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
TGTTCAATTCCTTTTACAAGGGA
3' ss Score
5.38
Exon sequences
Seq C1 exon
TCCCTCATTGATATTACTGTGAAGGAATTACCTCCAAAAGTATTGGGATCACCAGCTTATCAGATTGCTGATATGGATCTTTTAAAT
Seq A exon
GTAAGTCTGGCTTCCTTCCTTGTCTGTCTTTGTTTCCTGGTGTTAGGATGTCGTGTCTGCAGATGTGCAGAGTACTTCACCAGGTCTGTACCTTTCACTTGTATTACAGTGTGCAGTGTTTGCCTGATGTATACCTGTCCTCACGTGTCATGCCAAAGACATGGTGATTAAGCACTGCAAAGCCTGTAGCTTTTTTTAAGGTGTTTAATTACTCCACTTGTAGTATAATTGCACTTCCCTCACAATCCCATCTAAGCAGTTTAGTTCTCATGTGTTTGCCTCTAATTTTTGCTTTGAAGTGTTAGAATTTACAGTTTCTGACAACTGTTAATACAGTTGTAAATTCCCTGTGGCTTACAGAAGGTGCATGCACACTGAAGTGAGACAGCTGTTTAACTTGATCAATGTATTTCTTGTTTTGACCTGTTCAATTCCTTTTACAAG
Seq C2 exon
GGAACACCAGCTTTGTTCTTAGTTCAGCTGCCTTTCCATAACAACCTCTTGGAGTGGTGTGTGACAGATGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484:ENSGALT00000037786:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]