GgaINT0050431 @ galGal4
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36053283-36054552:-
Coord C1 exon
chr7:36054409-36054552
Coord A exon
chr7:36053799-36054408
Coord C2 exon
chr7:36053283-36053798
Length
610 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCACCTTTTTCTTTTTTCAGGTA
3' ss Score
13.15
Exon sequences
Seq C1 exon
CATGATTCTCTCAGAATTGGAAACTCATGAGGATGCTTGGCCTTTCTTACTTCCTGTAAACTTGAAACTTGTTCCTGGTTATAAGAAAGTTATTAAAAAGCCTATGGACTTTTCCACAATTAGAGACAAGCTAACTAGTGGACA
Seq A exon
GTAAGTAAACTTATTGCAAATTCTACTTACCCTGTGATTTCAATGCTCCACATGTGCTTATTGGTAGACTTGAGAATTGTACTGCATTACTTTTTAGCAGCTCCTTTGCGTACTGGAACACTATTTCAGGATAAGAAAAAGAGTAAAAAAAGACAACATAACAGGATTAGTTCAGGCAGCCCTTTACATACCTGATTGTTCCTTTTCTGGGTAAATGCAGCTATACTCAACACTTCCTTTGAAAGGACTTGAGACCAAAAAAAAAGATGAATAAGTGGAAAATACCAATATTATTTTAACTAGAAAAATGTTGAAGGGAAAAGGGTAGCTAATTTGAAAAATAAAAAAGTTGCCCAGTTCAGACTTGAAATTCTATCTTAATTTTTTTTTTTTTAGGATAGTAACAAAAACAGTAATGAAAAAGAATTTGTTTGTGCTGAGGTTTATCTTCCTGAAAATACTAAAATAAATTTAATTTATTCATTGAACATTCATTGCGTGTTCTGTAACTGGTTGTAAATTCTCTGATGTTAGGAGAGTTTTTTGTTGTGTACTTTTTTCCCTTTGATTTTAACTGTTCTAGAAATCATTCACCTTTTTCTTTTTTCAG
Seq C2 exon
GTACCCCAATGTTGAAGCATTTTCGCTAGATGTCAGGCTTGTTTTTGACAACTGTGAAACCTTTAATGAAGATGATTCTGACATAGGCAGGGCTGGCCACAACATGAGGAAATATTTTGAAAAAAAATGGACGGAGATTTTCAAATTGAGCTGAAGTTACCAGCACTCATTTTTTCCCCTTAAATGAGGACTGATGAGACCAGCAATGTGAACATGAAAGTGCAAGGCTCCTGCATAACTAGTGACTGTTCTTCTTCCTTAGAAGTATCACAAAAAAAGTGGTATTAGTTCTAAAGGCTTCACTCCTACAGCAACCATGGCCCCTTGGTTCTTGGTTTGTATGTTTTAACAAACTAATTTAGGTAGAACAGGGAAGCACACCCAAAGAATTTCAAAGAAAGGGGTGTTATAGTGCAATAGCAATTTAAAATATATCAAAACGCACTGAATATTCAACCACCAGAGCTCTACTCGGGAAAATGGTTCTTTTTCCCTTCCAATAAATATCTATTTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000020542:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=FE(57.8=100)
A:
NA
C2:
PF0043920=Bromodomain=PD(39.8=63.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCATGAGGATGCTTGGCC
R:
GCAGGAGCCTTGCACTTTCAT
Band lengths:
357-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]