RnoINT0024841 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45970037-45971010:-
Coord C1 exon
chr3:45970867-45971010
Coord A exon
chr3:45970248-45970866
Coord C2 exon
chr3:45970037-45970247
Length
619 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
AACGATGTGTTTCCTTTCAGGTA
3' ss Score
11.78
Exon sequences
Seq C1 exon
CATGATCCTGACTGAAATGGAAACGCATGAGGACGCCTGGCCCTTTCTGCTTCCGGTCAACCTGAAGCTCGTACCCGGCTACAGGAAGGTTATTAAGAAGCCTATGGATTTTTCTACAATTAGAGAAAAACTAAATAATGGACA
Seq A exon
GTAAGTAATCCACTTCTGTTCAGTCAGTATCGACGATGGAGGTTAGCAGATGACATAACCTGAGGCATGTAGAGACCGGAAGCTCTTCTCCATTAACACTTGGATGAAGGTAACAGGATGCCTAAGGGATAGGATTGGCCAGAGGAGTTAGGGAAGTAGAGGGATCTGTAGAGGCCTCCAGCAGAACGGTAAGAACTCAGGTAGTAAATGAGATGTGGGAAACACAGGGCAGTTGAAAAACATTTTGTTGCTGTTGTCTTACTCTGTAGCCCATGCTGGCCTCAGACTCGTTGACCTTTCCCCTTCTCCACCAACCAAATGCTGGGATCACAACTATGTGGCTCCATGCCTGTCCTGGAAAATACCTAGTTTTATGACCAAGAGAGCACTTGGTTTGTTATGCTGACCATCTTTAATGCAGCGTGGCCCAGAGCGTAATGAATGTCGTCAGGTGTGGTTTGGTGGGCGGCGCTCTGTGGGAGGAGTCAAGCGCAGCAACCAGCTAGCGTTCCTGCTCCCGCTCCCGCTCCCTTAGCTCTCCTCTCTCTGTTTAACTTCTTTTCCTTCTGTGTGCCATCCACAGCCCTGAAAGCTTTCTTAACGATGTGTTTCCTTTCAG
Seq C2 exon
GTATCCCAACTTTGAGACCTTTGCTCTAGACGTCAGGCTTGTTTTTGACAACTGTGAAACATTTAATGAAGATGACTCGGACATAGGCAGAGCTGGCCACAGTATGCGAAAATACTTTGAAAAAAAGTGGACAGATACCTTCAAAGTGAGCTGAAGTTATAATCTTCTTTTTCTCTTTTTTTCCTTTTGAACAAGGACAAACAAGACCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=FE(57.8=100)
A:
NA
C2:
PF0043920=Bromodomain=PD(39.8=63.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGACTGAAATGGAAACGCA
R:
GCTGGTCTTGTTTGTCCTTGT
Band lengths:
350-969
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]