HsaINT0016847 @ hg19
Intron Retention
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160175490-160181465:-
Coord C1 exon
chr2:160181322-160181465
Coord A exon
chr2:160176930-160181321
Coord C2 exon
chr2:160175490-160176929
Length
4392 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
AATTATTTGTTTTCTTTCAGGTA
3' ss Score
11.56
Exon sequences
Seq C1 exon
TATGATTCTGACTGAAATGGAAACTCATGAGGATGCATGGCCTTTTCTACTTCCTGTAAACTTGAAACTTGTTCCTGGTTATAAGAAAGTTATTAAGAAGCCTATGGATTTTTCCACAATTAGAGAGAAACTAAGTAGTGGACA
Seq A exon
GTAAGTAAATCATTTCAGTTCACTAAATATTTATTGAATACCTGATATATGCTAGGCATATTTTTAGTGAGCCAAAGATATTTTAATTAACAGCAAGATATAGGCCCTGCCTTTGAGGCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGGTTAGAGTAGAATAGTATAGAAGAGAAACCAACTAAAATTATTTAAGAAATTAAAAACCCGTGTAATAAACCTGCTTTTGACATTGAAAGAGCACCACAAACCCAAGCTGAAGGTAAGGAAAAGTATCAGGAGAGCCTCCCAAAGTAAGTAACATATAAGCCGGAATTTGTATTTTGCATCCATGGAGTATCAACCACACGTCATATGGATTTAACAAAAATTGACTCAAATATTGTTAGATTATCACAATGTAGAAATAGAAGATCTTTGGAAGCTTTACATATTAAGAGCTTTAATGTGAGTTATTGGAGAATACCAAAATTCCATTTATTAAATGCGGGAGAGAAAGCTTATTTGCTTTTCTCTACCATATTCTCTTTGCAATCCTATTCCAAGAATAAAGTTACTTACTTTGGGAGGCTTTCCTGATACTCATACAATATATATTTTAATTACATTGTTATTATCCAGTATATTATTTAGTTCTTCCTATACATTCTTTTGGTGAAAATAACTGTTCTCTATGATTTATATTCAATTTAGAAGAGTTAAATAGAACTTATAATGATCAGCATCCCTCACATATATCAACTGATTTACTAGATTGACCAAATGACAAATTTATTTCTTTGGAGGATGAAATAACAGCCGTCCAAAGGTTTATGTCTGTTTTGTTTTATTATTTTTTAATTACAGAAGGGACCTGCCTAAGTTAAGGAAGCGTTTAAATGATTGATTGGTACTGATTGGTTCCAATATGCAAACACTGTTACCTAGATATGGACTAGTTCTTTTGTTTGTTCTTTTTTTTTTTTTTTGAGAGAGTTTCACTTTTGTTGCCCAAGCTGGAGTGCAGTGGTGCATCTCGGCTCACTGCAATCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGCACGCCACCATGCCTGGCTAATTTTTTGTATTTTTAGTATAAACAGGGTTTCACCATGTTAGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCGCCCACCTCCACCTCCTAAAGTGCTGGGATTACAGGCGTGAACCACCTCACCCAGCCTCTTTTGTTTGTTCTATCAAAATAGTTGTCTAGGTAGATGGCACAATGAAATTTATAACTAACATGGCCAAGAAAAAGAATTACACATGAAGACTTTACTAGTATTTAAATTAACTCTTGATTTTAACTTCCATGATCTTCCAATTCCTGGATAAAAGATTAACGTAAACCTCAAAATTCCTAAAACAAATAGGCTTAGAAATATTTATAACAAAAAAATGCTACAAAATCATATGGGCCAGGCAAGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGTGGAGGCAGATGGATCACTTAAAGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTGAAATCTCATCTCTACTAAAAGTACAAAAATTAGCTGGGCATGGTGGTGTATGCCTGTAGTCCCAGCTACTCAGGGATGAGGCACAAGAATCACTTGAAACTGGAGGTGCAGGTTGCAGTGAGTTACCTCGCCACTGCACTCCAGCCTGGGCAACAGAGTGAGATTGTCTCAAAAAAAAAAAAAAAAGCTACAAAATCAGAGCTCCTTTGAAAAATGAGTCCCAGTGAATGGAGGAAGTCACAGGGGAAGAGAAAGAGAGAAGGAAACAGTCTGTGTATTCCTGTTTGTGATGCCAGGTGTGTGGGAAGCAAAATTTCAGTGGATTCAAGCTCCTCGAACTCTCCACTTTGAGTTGTTTGATTAAACCCAAATTAATGAGTTGGAACCAAAACTCACAAACCATATTTCAAATTTTTAAACTAGAAATTTTTAGAATAGAGGGAGGGGCCTACTTACATGAATTTTTCTGAGTTCCATTAGCTGCCCCATCCCATAAAGGAAGGACACACATATGAGTTGTATACTTTTTTCACCTAGAATCTCACCTAGAATTCTCTCCTGGACTCCACTCTCCCTAATGTTAATCATTAACCTTTTCTTAGGGTAAGGAACAAAGGCAGAAGTAGTTCTCAAATCAACTTTAAAATATTTTGTAAAAATCATTCCCACACAGATTGTATGATTCCATTTAGATGAAGTATCTGGAATAGATAAATCCATAGAGACAGATAGAAGATTGGTGGTTGCCAGGTACTGGGAAGAGGGAGGAATGGGGAATAACTGTTTAATGAGTATGATGTTTCCTTTCAGGGTGATGACAGTGTTTTAGAAGTGACGATAATACAGTGTTGTGACTTAAATGCCACTGAACTGTCCACCTTAATATGGTTAATTTTATGTGAATTTCTTAACCTCAGTAAAAATAAGCAAGTAATTCCTAGGAAAATGGATGAGGTTACATAAGGGCTGACTTAACTCTGTGAGCACATTACGCATAGAGAAATATTTCTTTCATTATCGCACAGAAGAAGCGAGTGAAAGGTCATACAAGATATTTCACCAAAGAAATAGAATTCCACTTTGACAAGATCTCACAGCGTCAGTGCCTCATAGGGTATTTCTCTTTTTTTAATTTTTATTTTAATTTTTGCAGGTACACAGTAGGTGTATATATTTATGGACTACATGAGATACAGGCATGCAATGCATAATAATCACATCATGGAAAATTGGGTATTCATCACCTCAAGCATTTATCCTTTGTGTTACAGATAATCCACTTCTACTCTTTTACTTATTTTAAAGTGTACAATTAAACTATGATTGACTATAGTCTCCTTGTTGTGCTGTCACATACTAGGTCTTATTCATTCCTTCTATTTTTTTGTACCCATTAACTATCCCCACCTCCCCACTGCAGTTCCCAGCCTCTGGTAACCATCCTTCTACTCTGTTTCCATGAGCTCAATTGTTTTGATTTTTAGATCCCACAAATAAGTGAGAACACGTGATGTTTGTGTTTCTGTGCCTGGCTTATTTCACTTAATATAATGACCTCCAGTTTGATCCACGTTGTTTCAAATGACAAAATCTCATTCTTTTTTTATGGCTGAATGGTGCGCCATTGTGTTTAAGTACCATGTTTTCTTTATCCATTCGTCTGTTGATGGACACTTAGATTGCTTCCAAACCTTGGCTATTGTGAACAGTGCTGCACCAAACATAGGAGTGCAAATATCTCTTTCATAAACTGATGTCCTTTCTTTTGGGTATATACTCAGCTGTGGGATTGCTGGATCACATGGTAGCTCTGTTTTTAGTTTTTTTGAGGAACCTACAAACTGTTCTCCATAGTGGTTGTACTAATTTACACTCATGAGATATTTTTAATGGTTACATTATTTTAGTATACAGATTGTCATAGGTTAGAATTAACTTAAAATTTGCATTTCTAAAAGCTATCTTTTAAAATGTATTGAACTGGCTTGAGTTGGTTTGAAATGACCATTCCCTTCTTACTAATAAGCTTATGCAGATTCATTCACCTTTCTTTTCTCTTTTCTGTTTTTCTACAGAGAAAGAGAATTGGGCTTATCCCGCCAGAAAAGCACAGAAGCCACAGTGCTTCTTGTTGAAAGACAGACCCTCATAATGTTACCTCTAGTAGAAAGATAGCATATGCTTGTTTTGCTTGTTTGGGTTCATCATACTCTATTGCTTGGGCAGAAGAGCACATATGAAGAGAAGAGAAATGGGAAATGGGGAAGACAACGCAGAGCACCATATCTTGGGGTGTATATAGAAGCTACAGGACAAGTGTAATTTTTATCATTGCATGGGGAGCATTGACATAATTTCTACTGCAGCTGAGCATTTTTTAATATGGATAATAGGATTCTGCAAGTGATACATTTGGTCAGAGAACTTAATAAACTAGTCAAGTGGGATAGGTCCTGTGACAGAATTGTGTGATACAGGTCAAACAGGAGTTGGGTTATGGGGAAAATGCCAGTTGAAATATGTTTTGATCTTTGGAGAAACCTATTTTTTCATTTAACCTGTTCTTTAAATCCAGTATGTTCCAGAACATACAAAAATGTTTAAATGTTCCATTTGTAAGAGGATATCATGTATTTTATATCAATTTAAATGCAGTTATCCTAATCATTTTTCTTTCATTTTTACCCTTTATTAACTCTTCATTTGTTTACAAAACAAATCCACTCTATGAACGCAATCTCTAATTATTTGTTTTCTTTCAG
Seq C2 exon
GTATCCAAACCTTGAAACCTTTGCTCTAGATGTCAGGCTTGTTTTTGACAACTGTGAAACATTTAATGAAGATGATTCTGATATAGGCAGAGCTGGCCACAATATGAGGAAGTATTTTGAAAAAAAGTGGACAGATACTTTCAAAGTGAGCTGAAGTTATAATAATCTCTTTATTTTTTTCCTTCTAAACAAGGACAAATGAGACCAGCAATGTGAACTGTATTTACATAAACGTGCAAGGCACATACATAATGACTTTCTTTTTCCTTAAGTATAAAAAAAAAGTATCAGAAGAATGATACCATTTTTAAAGGCTTCATTCCTACAACAACCAAGGCCCTCGGTTATTGGTTTGTGTGATTTATCAGCTAATTTAGGTAGAACAGGGAAGCACACCCAAAGAATTTTCAAAGGAAAGGGTGTTATAGTGCAATAGCAATTAAAATATATCAAATCGCACTGAATACTCAACACCAGAGCTCTAATGTGGGAAATGGTTCTCCTTTCCCTCTCAATAAATATCTATTTTTCATTTTTTTACTTTGTAGTTTATTTTTTAGTGAATGTATTTAATTTTATGAATTATTTATGATTAAACCACATCCAGAATCTTCGTTTTCTGTGAAAAGGAAGAACTAGAAAATTGCTTTAAATCTTGAAAATACAAGGAATGTTTTAAAATATAAAACAAAGCCAAGTTAAACTGTTTACACTGATGTGCTATAAAAGCACCAAAAAGAAACTTTACTGTAGAGTTACAAGTACATTTATATATATATGTTGCTGCATCACTTGTGTAGTTAAATTGTATTTCAAAACAGTGAAAAAATTGACATGTATATACTGTTCATTCTTGTTTATATTAAGTCTTGTTTTAAATATGTATTATGTGTATATATTGTTTGCAGACATTATTGTTCATGCCTTAGAGGATTGTAGCATTTTATTTTCGTCTGAAGGTAATGATAGCTATACAGTCTGTACAGTAATTATCCTCTACCAACACTGTGGCGTCTCCTTAATCTTGGTAGTGCCTGCCTTTGAAACAGGGTGTAGGGGATATTAGTTTTCCATTTTTCTATTTTGTTATATAATTTTAAGCCACCAGGGCCTAAATTAAAGTATAATCATTTGTATCCATGTGGAATAAAATTGTGACAATTTCCTACGCACACAGTATTTTTTCATAGAAACATTTCCCTCCCATTTGCCTTGCCTCAGAAATAAATTTAAAAGACGTTTGTAACCACTGTGTTTTATCTACTGTGTGTTGTGGTGGCCTGTTGGAGGCAAATAGATCAGATTTTTTTTGTACCTACGTAAGAGTACTTGAAGTTTTATTTAAAATAAAATGTTGTGGAAAAGGTAGCATTCTTTTTTTAGGAGTGTTATTTTTCACTATGTGTGGCACGGATACAATAAAAGACTTTTACAAACTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-BAZ2B:NM_013450:36
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0043920=Bromodomain=FE(57.8=100)
A:
NA
C2:
PF0043920=Bromodomain=PD(39.8=63.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)