GgaINT0051512 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NZY2]
Coordinates
chr5:14280226-14281112:-
Coord C1 exon
chr5:14280998-14281112
Coord A exon
chr5:14280314-14280997
Coord C2 exon
chr5:14280226-14280313
Length
684 bp
Sequences
Splice sites
5' ss Seq
CTAGTATGA
5' ss Score
0.87
3' ss Seq
TCTTGGCTTTTCTTTCTTAGCTG
3' ss Score
8.14
Exon sequences
Seq C1 exon
GATCCCTCTGCCCTTCAGCTTGAAAAGCATCCTGATTGAGGACACCTGTGCATACTTCCAAGTCACCTCCAAGCTGGGTCTGACGCTCAAGTGGAACTGGGCTGACACTCTCCTA
Seq A exon
GTATGAACAGCCAGTTAGTTGTTTTTCTCTTAGTGAACCTCACCAATGATGAAAAGCAGAGTGGGATGCAGGCACCATGTTAATATAAGAAACTGAGAGGCAGTGGTGGTGGGGAAGTATCACAGTATCCACATGTTGACGGGGCCTACCACAGTAGGTAATGGTTTCAGAAGACAAGGGAGTGGGGTTGCAATGCCCAGGCCTCCCTAGGCAGTTTTACATGACAAAAAGTGCCACTGTCAATGCTGGAGCATCTCTATAGTTATCTGCTTCCTACGTGGGGTACAGCTGGTGACCCCAGCTCTTTCCCAATGCACATCTTTTGTGGGAAACTGATCTATGTGGTCATTTGAGAAGACCTTGGCATCTCTCATTCCAAGGCATTGCTATAGGGCAATTCCCCTATATACTTTCACTCCAAAATACCCTCTGCAGTGGTGGTGTATTTATCCACCTCAGTCAGGAATGAGATTAAATAAACAGAAGTTGTTTTGCAGGGCAGAGAGACAGAAAATAAGTAGAAGGTGAATGGAAGCAATCAGGTGGTAATTCAGGATCTAATTTAATGAAGTATTTGTCATCTTGTTTGTCTATGCTTTTCTGTAGTGAGCCATATGGTAATATGCTGCTGATGGGAGAAGAAACCTTTAAACCCTGAGTTTCCTCTTGGCTTTTCTTTCTTAG
Seq C2 exon
CTGGACCTGGAAGAAACATATAAAGAGAAAATATGTGGTCTGTGTGGGAACTATGATGGCAATAAGAAGAATGATTTAATTTTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717:ENSGALT00000010866:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(26.6=100)
A:
NA
C2:
PF0009420=VWD=PD(19.6=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCCTCTGCCCTTCAGCTT
R:
TCTTATTGCCATCATAGTTCCCACA
Band lengths:
182-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]