GgaINT0051534 @ galGal3
Intron Retention
Gene
ENSGALG00000006717 | MUC5B
Description
NA
Coordinates
chr5:15973081-15973728:-
Coord C1 exon
chr5:15973600-15973728
Coord A exon
chr5:15973166-15973599
Coord C2 exon
chr5:15973081-15973165
Length
434 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
TGTTTACTTTAACTTTCCAGGCT
3' ss Score
7.72
Exon sequences
Seq C1 exon
CTGTGTTCTGTGATTACTACAATCCACCTGACAAACATGAGTGGTTCTATAAACCCTGTGGAGCACCCTGTCTAAAGACCTGCAGGAACCCACAAGGAAAATGTGGAAACATACTGTACAGCTTAGAAG
Seq A exon
GTAATTCTTCCCTGACTTTGATGCAGTTTGTTGAAGATTTGTCTGATTTTAAATGCCTTAAGCAGCAAGACTGCTGTCTTACCTTGGAGGAATATCTCATTTGCCCTAGAAACTCACTGACCGTGCCTTGCCTGAGGCTAATTCTCTGTGCAGTAGTACCATTTGAAGCAGAATTTGCATGCTACTTTTAAACCGGGCAAAGATACAAGGTCACTGAATCTAAATTTGTGAAGAATAATCATCTGTTGACAGAGTTCATTAGAACTTTCAGAGGAGAGGGAAAAAGAGGACATGGAAAATGGGAAAATGAAGAACATTTATACTGGATCATATTCATACTGGGATAAAATCTGCATCTGATACAGGTGTTTATGTGATTGCCTTGAATCTACGTAAAGCAGACTAAAGATGTTTTGTTTACTTTAACTTTCCAG
Seq C2 exon
GCTGTTACCCGGAGTGTAGCCCTGACAAGCCGTATTTTGATGAGGAGAGGAGGGAGTGCGTCTCCCTCCCTGACTGCACTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717:ENSGALT00000010866:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(55.2=72.7)
A:
NA
C2:
PF0182612=TIL=PD(43.1=86.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTTCTGTGATTACTACAATCCA
R:
CATGAAGTGCAGTCAGGGAGG
Band lengths:
214-648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]