GgaINT0056718 @ galGal3
Intron Retention
Gene
ENSGALG00000010831 | CD6
Description
NA
Coordinates
chr5:18082130-18082825:+
Coord C1 exon
chr5:18082130-18082438
Coord A exon
chr5:18082439-18082514
Coord C2 exon
chr5:18082515-18082825
Length
76 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATCCCCTGACCTCCTTGCAGGGC
3' ss Score
9.07
Exon sequences
Seq C1 exon
GAAGCAAGCAGCTGAGGCTGGTGGGCGGCCCCGGGCGCTGTGCTGGCAGGGTGGAGGTGTACAGCGAGGGCACCTGGGGCACCATCTGCCAGGACTCCTGGACCCTGCAGGATGCCACCGTCGTCTGCCGCCAGCTGGGCTGCGGACGGGCCCTGGAGGCTCCTGGCTCCGAGCGCTTTGGGCCTGGCACTGGGACACTGTGGCTGGGTGCTGGGGGCTGCGCAGGGACAGAGGATGCTCTCTGGCACTGCCCAGCCCCAGTGCAGCGCGGCTGCCGGCGTGGCGGCGGTGCGGGCACCGTGTGCTCAG
Seq A exon
GTGAGTGCCACCATCCGTCTGGATGGGAGCAGCCCCACCACCCTCAGGGTGCAGTGATCCCCTGACCTCCTTGCAG
Seq C2 exon
GGCTGCTGGACCTGCGGCTGATGGGGGGAAGCAGCAAATGCAGTGGGCACCTGGAGGTGCTGCATGAGGGGACGTGGGGTCGTGTTTGCGCCAATGGCACCAGCCCTGCCACGGCCACTGCCGTCTGCCGCCAGCTGGGATGTGGCACACCGGGGAGTCTGACAGACAACCCTGCAGAGGGCTCCGAGCCCGCCTGGCTGAGCTGGGTGAGGTGTGAGGAGGGGGCCCGCTCGCTATGGCGCTGCCCCTCGGCACCCTGGCAGCTGCAGGAATGCGGCCCCACCGGGATCACACACATCATGTGTGACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010831:ENSGALT00000011767:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.3)
A:
NA
C2:
PF0053013=SRCR=WD(100=92.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGACAGAGGATGCTCTCT
R:
CAAACACGACCCCACGTCC
Band lengths:
175-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]