GgaINT0060919 @ galGal3
Intron Retention
Gene
ENSGALG00000014699 | MEGF10
Description
NA
Coordinates
chrZ:55310965-55312581:+
Coord C1 exon
chrZ:55310965-55311201
Coord A exon
chrZ:55311202-55312453
Coord C2 exon
chrZ:55312454-55312581
Length
1252 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ATCTTTCTTTTCCTTTTCAGAAA
3' ss Score
12.19
Exon sequences
Seq C1 exon
CTGGCGTAATTATAGTGGGAAACCTGAACAGCTTAAGCCGTACCAGTACTGCCATCCCTGCTGACTCTTACCAGATAGGGGCTATAGCAGGCATCATCATTCTTGTCTTGATTGTGCTCTTCCTGCTAGTGCTGTTCATTATTTACAGACATAAGCAAAAAGGGAAAGAAACAAACATGCCTGCAGTGACCTATACTCCTGCGATGAGGGTCATCAATGCTGATTACACCATTTCAG
Seq A exon
GTAAGTGAGATTTGGAATAGATTTTTCCCTCTGTCTCTTGACTTTGAGTTTTCAGCCAAGTTCTGAAGGGGTTCAGATCTGCTCTTAAAAGGGTTTCAATATGCATCTCATCTTTTTGCATCAGTGAGGGCTGCAGAGAGCAGGGAACTATTTGTTCCCAGAGAGTGTCTGAAAGTCTGCCTTGGAAGCCTACCTAGAAAGACAGACTGGGAAGGGTTTCCTTCTTTGGGAAGAGAGAGATTGCAATTCACTGCCCCCTATGGCCTTTTGCCAGCAGAGCAGCACCTAGGATGACATGCTGCTGGCAGATCAGAACACGGGAAAACTGGAATGCAGTGGTAGGCTATGAGACCTTCCTGCTGCTGCCAGAGATGGGGTTCGGAGGGAGCATGGCCCAGCATTTGCAGCCATTTAATTTGTTGTGTATCACAGTCTTTCAATCTGTGCATTTAGTACTAGAAAGCTGGCATACATTGGTAAAATACATTAATTACTGAATGAAGGATCAAGTGACCATATACCTTGCTTTACTGTAGAATGATTTTCTGTGTTAACCAGTGGAAGTATAGGTCTGTGCTTTAAAGAGACTTGGAAAGTGTGGCAAAACATGGTTTCTGCTAAGACATTAAATTTGATGCCAATGGCTAGAATATGGAAAGTCTGCTGTAGCTAGCTGTGGTTCTCTAGAGAGGCAGAGAACAGAGCTGCTCAAGTTTGAGACAAATGAAGGGAAGGAGCAATGCTTCTGAAACAGAATGGGAGTTTTCAAGCTGTGAAAGTCCACATAAGTTGGCATTAAATGGATAAATGAAAATGCAGGCAGTGCTGTCTTTTGCAAATTACTGTAAAGGAAATTGGCAGGTAAAGAAGCCAGCAAAAGCAGTTGTCAGAGTAGAGAAGGATGTACCACCACAAGTAATGGTGCAGTATAAGCACCAAAAAAATATACGGTGCTGTGAAGTCTAAGGTAAAAGTGTCCATAATTAGGACAGTGCCGTGATTACAGTTGCAAAAGTGAGCAGGGGACCACATCTGAAAGACAGGTCAGCTCGTAACATTTGAGAATGCTCTCTGGGGAAGGAAGGACACAGCTGGTCACTTACTGCTCTGTATCTCTAATTTATTCAGAGGAATGCCATATTTTTATTCAAGAAATGCTAGACTAGTCTGAAATCAGTGCAGTACTATGAAAAATAAGAAAGATACGATGCATTATTTTAAGTTGTTCATTTATCTTTCTTTTCCTTTTCAG
Seq C2 exon
AAACCATCCCTCATAGTAATGGTGGAAATGCTAACAGTCACTATTTCTCTAACCCCAGTTATCATACTCTAACACAGTGCACTACACCACCTCATGTCAACAACATGGACAGGCTGACTCTGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014699:ENSGALT00000023694:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.140
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(18.9=8.8),PF061436=Baculo_11_kDa=WD(100=51.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGAACAGCTTAAGCCGT
R:
CTTTGCCAGAGTCAGCCTGTC
Band lengths:
345-1597
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]