GgaINT0063940 @ galGal3
Intron Retention
Description
NA
Coordinates
chrZ:9105275-9105595:-
Coord C1 exon
chrZ:9105484-9105595
Coord A exon
chrZ:9105373-9105483
Coord C2 exon
chrZ:9105275-9105372
Length
111 bp
Sequences
Splice sites
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
3' ss Seq
AATTAGCCTAACCATTCTAGGTG
3' ss Score
4.77
Exon sequences
Seq C1 exon
GCCATGGAGTTGCTCGTGGAAAAAGCAATCAGCAGTGCTACTGGACCACAGAGCCCTGGGGATGCACTTAGGAGAGTTTTTGAGTGTATATCTTCAGGAATCATCCTTAAAG
Seq A exon
GCAAGTTGAATTTGATCTTTGTATGTATACTTACACTGAAGTAATATAAAGATTTCTAATCTTAGTCAAAATAAGGTAAAGATGTGCTACTAATTAGCCTAACCATTCTAG
Seq C2 exon
GTGGTCCTGGCCTTCTGGACCCTTGTGAAAAAGATCCTTTTGATACACTTGCTGTAATGACAGATCAGCAACGAGAGGATATTACTTCAAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003235:ENSGALT00000005121:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.061
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(14.9=100)
A:
NA
C2:
PF075289=DZF=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATGGAGTTGCTCGTGG
R:
CTGTGCACTTGAAGTAATATCCTCT
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]