BtaINT0164428 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008414 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr20:41344720-41345043:+
Coord C1 exon
chr20:41344720-41344831
Coord A exon
chr20:41344832-41344945
Coord C2 exon
chr20:41344946-41345043
Length
114 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GCCTATGGTGATTGCTGTAGGTA
3' ss Score
6.79
Exon sequences
Seq C1 exon
GCAATGGAGTTACTAGTAGAGAAAGCAATCAGTAGTGCTTCTAGTCCTCAAAGCCCTGGAGATGCTCTGAGAAGAGTTTTTGAGTGCATTTCTTCAGGGATTATTCTTAAAG
Seq A exon
GTAAGTTTTACTTCATTTTTAATGTTTGTGTGTTTGATAGTTGAATGAGAATTATTCATTCTTCTACAAATGGATGATGATAATGCTTCATTCTGCCTATGGTGATTGCTGTAG
Seq C2 exon
GTAGTCCTGGACTTCTGGATCCTTGTGAGAAGGATCCCTTCGATACCTTGGCAACAATGACTGACCAGCAGCGTGAAGACATCACATCCAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008414:ENSBTAT00000011072:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(14.9=100)
A:
NA
C2:
PF075289=DZF=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATGGAGTTACTAGTAGAGAAAGC
R:
GATGTCTTCACGCTGCTGGTC
Band lengths:
195-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]