RnoINT0168801 @ rn6
Intron Retention
Gene
ENSRNOG00000011627 | Zfr
Description
zinc finger RNA binding protein [Source:RGD Symbol;Acc:1311890]
Coordinates
chr2:62208274-62208594:+
Coord C1 exon
chr2:62208274-62208385
Coord A exon
chr2:62208386-62208496
Coord C2 exon
chr2:62208497-62208594
Length
111 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCTCTTTACAATGATTGTAGGCA
3' ss Score
5.51
Exon sequences
Seq C1 exon
GCTATGGAGTTACTGGTAGAGAAAGCAATTAGCAGTGCTTCTAGTCCTCAAAGCCCTGGAGATGCCCTGAGAAGAGTATTTGAGTGCATTTCTTCAGGGATTATTCTCAAAG
Seq A exon
GTAAGTGTTTTTATTAAGTAAAATTAAGTGTATTTCTTTATTGAGTAAGAGGTTTACTTTCCCAAGTAGATAATGCCACTAATAACTTTTATCTCTTTACAATGATTGTAG
Seq C2 exon
GCAGCCCTGGACTTCTGGATCCTTGTGAAAAGGATCCCTTTGATACTTTGGCAACAATGACTGACCAACAGCGTGAAGACATTACATCCAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011627:ENSRNOT00000016196:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.305
Domain overlap (PFAM):
C1:
PF075289=DZF=PU(39.1=97.3)
A:
NA
C2:
PF075289=DZF=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGGAGTTACTGGTAGAGAAAGC
R:
CTGTGCACTGGATGTAATGTCT
Band lengths:
210-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]