MmuINT0180093 @ mm9
Intron Retention
Gene
ENSMUSG00000022201 | Zfr
Description
zinc finger RNA binding protein [Source:MGI Symbol;Acc:MGI:1341890]
Coordinates
chr15:12110377-12110695:+
Coord C1 exon
chr15:12110377-12110488
Coord A exon
chr15:12110489-12110597
Coord C2 exon
chr15:12110598-12110695
Length
109 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TCTCTTTACAATGACTATAGGCA
3' ss Score
4.83
Exon sequences
Seq C1 exon
GCTATGGAGTTACTGGTGGAGAAGGCAATTAGCAGTGCTTCTAGTCCTCAAAGCCCTGGAGATGCCCTGAGAAGAGTATTTGAGTGCATTTCTTCAGGGATTATTCTCAAAG
Seq A exon
GTAAGTGTTTTTCTTAAATAAAATTAAGTTTATTTCTTTATTGAATAATAGACCTACTTTCCAAAGTTGATAATGCTACTAACACTTTTTCTCTTTACAATGACTATAG
Seq C2 exon
GCAGCCCTGGACTTCTGGACCCTTGTGAAAAGGATCCCTTTGACACTTTGGCAACAATGACTGACCAACAGCGTGAAGACATTACATCCAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022201-Zfr:NM_011767:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.170
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(14.9=100)
A:
NA
C2:
PF075289=DZF=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGGAGTTACTGGTGGAGA
R:
CTGTGCACTGGATGTAATGTCT
Band lengths:
210-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: