HsaINT0185598 @ hg38
Intron Retention
Gene
ENSG00000056097 | ZFR
Description
zinc finger RNA binding protein [Source:HGNC Symbol;Acc:HGNC:17277]
Coordinates
chr5:32363948-32364275:-
Coord C1 exon
chr5:32364164-32364275
Coord A exon
chr5:32364046-32364163
Coord C2 exon
chr5:32363948-32364045
Length
118 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
CCCTGTGGTGATTGCTGTAGGTA
3' ss Score
7.7
Exon sequences
Seq C1 exon
GCTATGGAGTTACTAGTAGAGAAAGCAATCAGCAGTGCTTCTAGCCCTCAGAGCCCTGGGGATGCACTGAGAAGAGTTTTTGAATGCATTTCTTCAGGGATTATTCTTAAAG
Seq A exon
GTAACTCTTACTTTGTTTTTAATGAAGTAAAATGAAGTTTACTCATTTGCTGGTTGAATAATTTTTTTTATAAGTGGACAATGCTAATAATTTCCTCTCCCTGTGGTGATTGCTGTAG
Seq C2 exon
GTAGTCCTGGACTTCTGGATCCTTGTGAAAAGGATCCCTTTGATACCTTGGCAACAATGACTGACCAGCAGCGTGAAGACATCACATCCAGTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000056097:ENST00000265069:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.212
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(14.9=100)
A:
NA
C2:
PF075289=DZF=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGGAGTTACTAGTAGAGAAAGC
R:
GATGTCTTCACGCTGCTGGTC
Band lengths:
195-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains