DreINT0177934 @ danRer10
Intron Retention
Gene
ENSDARG00000027109 | zfr
Description
zinc finger RNA binding protein [Source:ZFIN;Acc:ZDB-GENE-030131-378]
Coordinates
chr5:40526910-40527295:-
Coord C1 exon
chr5:40527184-40527295
Coord A exon
chr5:40527008-40527183
Coord C2 exon
chr5:40526910-40527007
Length
176 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
GACTTTTCCTTGTAATGCAGGTG
3' ss Score
7.87
Exon sequences
Seq C1 exon
GCTATGGAGCTACTGGTGGAGAAGGCCATCAGCAGTGCCTCTGGACCAATGAGCCCTGGAGATGCTCTGCGAAGAGTCTTTGAATGTATTTCCTCAGGCATCCTGCTATCAG
Seq A exon
GTAAGATCTGAATGTATTGATGCAATTCCCCCCTAAAACATGGCTAAGAGACATTGAAAATGCAAATGTTTTTAATGACATGGATTAGTAGGAGAGTTGGTCAAACTCTACACAAACTCTACTTTTTTATTTGGATGCTTAGTTCAGTATATGCTCGACTTTTCCTTGTAATGCAG
Seq C2 exon
GTGCTCCAGGATTGATTGACCCCTGTGAGAAGAATCCAACAGATACACTAGCATTCATGGAAGAGCAACAGAGAGAGGACATTACGTCAAGCGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027109:ENSDART00000074789:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.242
Domain overlap (PFAM):
C1:
PF075289=DZF=FE(14.9=100)
A:
NA
C2:
PF075289=DZF=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGGAGCTACTGGTGGAGA
R:
CTGAGCGCTTGACGTAATGT
Band lengths:
210-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]