GgaINT0068014 @ galGal3
Intron Retention
Gene
ENSGALG00000008088 | ACSL4
Description
NA
Coordinates
chr4:13888747-13890173:+
Coord C1 exon
chr4:13888747-13888897
Coord A exon
chr4:13888898-13890049
Coord C2 exon
chr4:13890050-13890173
Length
1152 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
GATAATCTTTCCTTTACTAGGCC
3' ss Score
8.8
Exon sequences
Seq C1 exon
CAAGCATTCAGCCAAGCAGACCTGTTCCCACAGACTTGGCTCTAGTAATGTACACCAGCGGCTCTACTGGGAGACCAAAAGGAGTGATGATGCAGCATAAGAACCTTATAGCCGGAATGACAGGACAGTGTGAGAGAATACCTGGGCTGGG
Seq A exon
GTAAGAAACACTTTGTTGCCAAGCGTTGAGGGGATAAAACAGAACCTCTAAAAGTGTGTAAGTTTATGGAAAATCTGTTGGTGGCACCAGCTATTAGCAAGCTCCTTCATTTTACTGTGAGCCAACTAATCTTTAATTTATATGGAATACACGTTGTGTTTGTGACCTCACCCTGTTCTTTGCAATGTATGCCCTTCCATATCTTGTCCCATGTGCTTTTTTTGCCCCACGATTTTTTTCCCCCTCACCTTTATCTAGAGGTCTGGCATGGATTTTGCACTCTTCTATGCATTAGAAAACATCACCAGATGGAGAAATCACTCATCTAGTCAAATTTGGGAAAGTTTTTTTTGCTAGATGCTTTCAGTCAGCTAGAATCACTTTAGGAAATATACCAGAGCCTACCACTTTCATTCAACTAGAGAGACTCCTGCTGGATGGATAATACATGTACTGCTGAATCTGCTCCAGTATTCTGCACTGAAATGAGCAGAGAAATAATGAATTGTTTTGATGATAGTACAGCCATCTGCAAACTCCATTGCTAATATTCTGAGAAAATGTTTTGTGAATGTGGATGTATCTTTGTCACTGCATTCACAAATGCAGCTAAAATAGCCTACAATAAACCTTTTGTATGGTAGGATATAAGAGCCATTCTGACCTGATGTTGGAAGCTTCTGTAAAGGTAACAGCTGTAAGTTTATTCTTGAGAAATTTCTGCATTCCCTGAAATAAGCCTCTGTTACCTCAGTGATCAGCTCTCCACTAATCTATTTAAGAAGGAGATGCTGTGATGACTTAAGGATTTGAATCACGTTGGTGATAATTTAAACATACTGATTTCATCCTTAATTTGGCACCTGGGATGAAATCTCCCATAAGGAGAAGAAACCTGCAATGGAGCACTAAGGAAACTTGAGCTTCCTAGAAAACAAGGCAAATCCTTTAATTCATACTGGTTTCAGTGAGGTAAGATTTTTACTGATTCAGTTTATAGACTGATTTATAATCACACCCTTCTTGCATGCAGAAGTAGTCTTTGTGACCTGAGCCTCCCAGAAACACAGCAAAACACACCATGAAAAAAGTGAAGCAGAATTTCAGTGCCCACGTGTATCATTGTTCACTAGATAATCTTTCCTTTACTAG
Seq C2 exon
GCCCAAGGATACTTACATTGGTTATTTGCCCCTGGCCCATGTATTGGAACTGACAGCAGAAATTTCTTGCATCACTTACGGCTGCAGGATTGGATATTCCTCTCCACTTACACTGTCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008088:ENSGALT00000013126:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.059 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCAGCCAAGCAGACCTGT
R:
TGATCTGACAGTGTAAGTGGAGA
Band lengths:
270-1422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]