HsaINT0002918 @ hg38
Intron Retention
Gene
ENSG00000068366 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:HGNC:3571]
Coordinates
chrX:109677988-109678415:-
Coord C1 exon
chrX:109678265-109678415
Coord A exon
chrX:109678112-109678264
Coord C2 exon
chrX:109677988-109678111
Length
153 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
TTTCTCTTATTTTGTTTTAGACC
3' ss Score
11.47
Exon sequences
Seq C1 exon
TGGGCATTCCTCCAAGTAGACCAACGCCTTCAGACATGGCCATTGTTATGTATACTAGTGGTTCTACTGGCCGACCTAAGGGAGTGATGATGCATCATAGCAATTTGATAGCTGGAATGACAGGCCAGTGTGAAAGAATACCTGGACTGGG
Seq A exon
GTAAGATAATTCTTTAACTTTCTTCTTAGAAATCAGAGTTCATGTTCAGCATTCTCTAAACTCAATCTATATTAAAATGATAAAGCTCTTGGTATTTCTAACTTCAAATGCCTTTTCAAGAATGGTTAAAATATTTCTCTTATTTTGTTTTAG
Seq C2 exon
ACCGAAGGACACATATATTGGCTACTTGCCTTTGGCTCATGTGCTAGAACTGACAGCAGAGATATCTTGCTTTACCTATGGCTGCAGGATTGGATATTCTTCTCCGCTTACACTCTCTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000068366:ENST00000348502:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCAGACATGGCCATTGT
R:
TGGTCAGAGAGTGTAAGCGGA
Band lengths:
249-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development