HsaINT0002918 @ hg19
Intron Retention
Gene
ENSG00000068366 | ACSL4
Description
acyl-CoA synthetase long-chain family member 4 [Source:HGNC Symbol;Acc:3571]
Coordinates
chrX:108921217-108921644:-
Coord C1 exon
chrX:108921494-108921644
Coord A exon
chrX:108921341-108921493
Coord C2 exon
chrX:108921217-108921340
Length
153 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
3' ss Seq
TTTCTCTTATTTTGTTTTAGACC
3' ss Score
11.47
Exon sequences
Seq C1 exon
TGGGCATTCCTCCAAGTAGACCAACGCCTTCAGACATGGCCATTGTTATGTATACTAGTGGTTCTACTGGCCGACCTAAGGGAGTGATGATGCATCATAGCAATTTGATAGCTGGAATGACAGGCCAGTGTGAAAGAATACCTGGACTGGG
Seq A exon
GTAAGATAATTCTTTAACTTTCTTCTTAGAAATCAGAGTTCATGTTCAGCATTCTCTAAACTCAATCTATATTAAAATGATAAAGCTCTTGGTATTTCTAACTTCAAATGCCTTTTCAAGAATGGTTAAAATATTTCTCTTATTTTGTTTTAG
Seq C2 exon
ACCGAAGGACACATATATTGGCTACTTGCCTTTGGCTCATGTGCTAGAACTGACAGCAGAGATATCTTGCTTTACCTATGGCTGCAGGATTGGATATTCTTCTCCGCTTACACTCTCTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000068366-ACSL4:NM_004458:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCAGACATGGCCATTGT
R:
TGGTCAGAGAGTGTAAGCGGA
Band lengths:
249-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)