GgaINT0069622 @ galGal3
Intron Retention
Gene
ENSGALG00000013646 | VPS37A
Description
NA
Coordinates
chr4:64982533-64982871:-
Coord C1 exon
chr4:64982766-64982871
Coord A exon
chr4:64982577-64982765
Coord C2 exon
chr4:64982533-64982576
Length
189 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGC
5' ss Score
8.05
3' ss Seq
ATGGAAATCTGTCTTTACAGGTT
3' ss Score
7.19
Exon sequences
Seq C1 exon
CTCTGCCACTGTAGACGAGCCAAAGAAGAAAAACTTCAACAGGCAATATCAATGCACAGCCAATTTCATGCTCCGCTATAGGTAAACTGCTGTTTTAATATTTCTG
Seq A exon
GTGAGCTTTTTTTTTTTAATCTACCACATTGTTACACACAGATTGCTAACTGCAACGGATTTGTTGTAATGCCTCGGGTTTTAATAATGCTTTGCTTGGGAATAAAGTGTGCCGCACCTGTTCATTAAAATTTAAAACACTGTTTCTGGAGGAGTTAATATATCTAACTATGGAAATCTGTCTTTACAG
Seq C2 exon
GTTTCCTGCAAATGACATCTGCCAACAGAAGAGTGACAAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013646:ENSGALT00000022194:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PD(7.3=40.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTGTAGACGAGCCAAAG
R:
TGGGTTTGTCACTCTTCTGTTGG
Band lengths:
146-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]