GgaINT0069622 @ galGal4
Intron Retention
Gene
ENSGALG00000013646 | VPS37A
Description
vacuolar protein sorting 37 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24928]
Coordinates
chr4:62745393-62745731:-
Coord C1 exon
chr4:62745651-62745731
Coord A exon
chr4:62745437-62745650
Coord C2 exon
chr4:62745393-62745436
Length
214 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAAC
5' ss Score
5.88
3' ss Seq
ATGGAAATCTGTCTTTACAGGTT
3' ss Score
7.19
Exon sequences
Seq C1 exon
CTCTGCCACTGTAGACGAGCCAAAGAAGAAAAACTTCAACAGGCAATATCAATGCACAGCCAATTTCATGCTCCGCTATAG
Seq A exon
GTAAACTGCTGTTTTAATATTTCTGGTGAGCTTTTTTTTTTTAATCTACCACATTGTTACACACAGATTGCTAACTGCAACGGATTTGTTGTAATGCCTCGGGTTTTAATAATGCTTTGCTTGGGAATAAAGTGTGCCGCACCTGTTCATTAAAATTTAAAACACTGTTTCTGGAGGAGTTAATATATCTAACTATGGAAATCTGTCTTTACAG
Seq C2 exon
GTTTCCTGCAAATGACATCTGCCAACAGAAGAGTGACAAACCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013646:ENSGALT00000022194:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.115 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF072008=Mod_r=PD(7.3=40.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]