GgaINT0072417 @ galGal3
Intron Retention
Gene
ENSGALG00000014144 | F1NZW6_CHICK
Description
NA
Coordinates
chr4:68608922-68614511:+
Coord C1 exon
chr4:68608922-68609020
Coord A exon
chr4:68609021-68614279
Coord C2 exon
chr4:68614280-68614511
Length
5259 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
ATGGTTTTATTTTGTGAAAGGTC
3' ss Score
5.47
Exon sequences
Seq C1 exon
GTCAAACCCTCTGTCAGGAGGGAGACCAGAGATGTACTTCCTGTCCTGATCCATGTGGAACTTCTCTCTGTGAGATGAGAAACAGCCAGACAAACTGCA
Seq A exon
GTAAGTAGGTCATATGCTTCATACTGTCACTGTTTTAGGGTGTTTTAGAGTGTAATGAAGATGCAGGGTAGGGCACAGTAAGTAATAATTTTATTTACTATCTAATATCACAGTGTGTAATGATTAACTGTTGAAAAGGGCAAGGCTGAAACAAAAGTTTCATCATAAATCCTTATATAAGAGATACTTACAATATTTGAAATATTTTTACCTTTTGTGAATTTTTGATATGTTCTTAATGAATGTCTGTAGTAATACTTTGTCTTAATGTCAAATTAAGCCCATCGTTTACATAAAGTAAAAAACAAAGTGTAAGTGAGATGAGAATTTATGATAAAAATACAGGAGATCATGATACTCTGTTTAGTAGTATGAGAAGTTTCAGCCCTTTTCTCAAGGAAGAATTTTAATATTATATCTGGCTAATCTAGTTATTCTTCTAATATGTTTGTAGAGGATCAGGGTATTCCACACTGTGTATCTACCCTTCTGTATTCTGTACCATACAACTCCACGCAAGCCTCTCACACCCACTGTTCGCTTGCTCTTTAAACTAAGGTAGAACTTTATATTCAGAAAGATTTTTTTATGTTAAAGCTTCAGTTCAGGACACCTCAGCACATGGGCAGTGTAGGCTTGCCTTTACTTTCATGTGAATGTGTAAATGTGTGGATATATCCTGTAATTGCTTTGTAAGCCTGAGCAATACCTATTGCAAATTATGGTTTGGTACTGCTAGCTTGTTTGGATAATGCTGCCTATGATGTTGCTGGATTAAATTGTGTAGGACCTTAGAATAACTTGTGTTCAAATGGATGCAGAGAGAACGATTGCCCAAATTCCGGATCAAAGTAGAGCCAACTAGATAATGCTGCCCAGGATTTCACAATGCTGAATTTCTAATATCTCCATTGACTGAAATTCCAGAGACTTTCTGGTCAACCTGTTTGAGCATGAAGCCTCATCCTCTTTACCTTATGTGGAACTGGAAATTATTGAGCTCCAAATTGTCTTTCACCTGTTATCTAGTCCCTGTACTTCCAATAGTCTGGCTCCATTTGCTTTACAACTTTCCATTAGGTAACTGTTTCAGTGTCTTTCACGAATGAGGGAGCCAAAAACCAGGCATAATACTCCAAACATGCTCTCACCAATAATGAATACAAGCAAATTACAGTTATCTTGTCATAGATAGCAGTCAGGATAATCAAGCATGATTTTTCCATGATAGATTCATGCTTGCTGTTCCAAGTCACGCTTACTTCTTCATATGCAGCCATCTTCTGGTAGGATTTTACTCCATACCCTTCCTCTGGACTGAGGCAGGCCTGACTAGACTGCTGTTCTCTGAATCCTCTTTCTTGCCATTCTTAAAGACAGCTACGTTTCTTGCCTTTATTTTCCAGTTTGATGCCAGGGTTTCCATGACCTTTTGAAGATGATGATAAAAACCAGCCTTTCAATGAAGTTAGCCAGTGAAAACTGAGATAGAAAAGACAGTGAGTACCTTGGCCATGCTTCTGATCACTAAGTTCCCTGCCCAATTAACCAGCAGACCCCCATTTTTCCCACCCTTCCTTTCACTGCCAGTGTACTTAAAAGAGCTCTTCTCACTCTTTACATTTCTCAGTAGACTCAAATTTGGCTGAGCTCTGAGATCCATCCTTGTATGCTTGGGAAATGTCTCTCTATTCATCTTCAATGTTCTATCCACTCCTTTGTCTTCTGTATATTTTCTCTTAATGTTTGAGCTCAGTCATGAAACCCATGTTCAGCCCAGACAGCCTTCTTCCTTGGTATACACTGGAATGTTCTATTGTGCTCCGAGGAGGGCCTCCTTTAAGACTAAACCTTTGTCCTTCTAGCTGATACTGACATAGTTAAACCCCCACACAAGTACCAGGGCTTACAACCACGAGGCATCCTCTAGCTCTCTAAAGGTGTTTTCATCTACCTCCTCTTTTTCTAGAGGGATCTCTTGCATATTCCTACTGTGGAATCTGACATAACTTGTGTTGGCCTGTCCTCTGATCTATATCCATAACCAAATTATCCATGTGAGGGGAAACCTTCCATGGTTACTGGAACAGTAGGTTTGTTGTATTTTTCAGTTTACTTGCCTGCTCTTCTTCAAGAAGTATTTAGAAAGTGTTATGGAATGGGAAGGAAAGTATCCATATAGCACAAAACTAATAAGAAATCAGTTTGAAAAACAAAACAAATTTAATAAAAGGTGAGTAATTTAAATTTTCTTTGTTGAAATCTCAAATATCTTCATTTAATTATCTCAGTCATTTTCTCTTTTGTGTCTCACAATCTGTGGGAGATTGTCTCTTACCTGCTGAGCAGCAAGCAATATATTGTGGAATACACATACTGGTCAAGGAGTAATACAACATTTTTAGTGGAAATATTTCGTCATGGTATTTTGGTCAGTAATCTGTAGCTCTCAACAAGAATAGTATATAATATGAATTAGACTTCTGGAGCATTTCTTTTCTTCCCTATCCAGTCCAGTAAATAAGTAATTGTTTATACAAAATAGAATGGCTAGTGTATTTTGGAGAGATTTTTCTGGTACAACATCTGGAAGTACTATAGTCTTTTATTCATATTACTATTGCTGTGCTATGAGACTAGAGTTACTTAATCTTTGGCAAGAGATAAGAAATCCCATGGAAAAATTCCCATGGAATTTTTCATTTTTGACAAAGCCACATTTTCTAACTCAGATATGTCTTTTGTTGGAAAATTCCTGGCTGAGCATAGGCCATATTTGCAATACTGAATATGATGGGTGTTCTCAGTATGTGATAATCTCCAATTAGGTTAGGCTGGCTTTGTAAACTGGTTAGTGTATTTCGGATAACAGAACAAATATCTGAAGAGACGTATGCATGTGCATAAAGAAGGTAGATTCAGGCTGTTTCCAGTGGTATGAGCACCAGCTGAAACACAGGATGGTCTGCCTGAATGTCAGCAAATTCTATTTGAGTAACTGAGCACTGGAACAGGTTGCCCAGGGAGGCTGTGCAGTCTTCATCCATGATCTTCAAAAGCCATTAGATGTGATCATGGGCAACTAGCTCTAGTTGGCCCTGCTTGAGTAGGGATTGGATCAGATGACCTACAGAGTTCTCTTCCAACCTAAACCATTCTGTGATTCTGTTAAATATTCTGCTCACTTCTGTTGAAATAGTAGTTGGGAGAGTTTCAGAGTTACTATACAAGTGAACAACACATCCTCATATCTAGTATAGTACATGATACTACTGTGTTTGGAACAGATTCCTCCAATAGGAATAGGACTCCAAATAGCAGGTAGTACAATTTAATAATAAAAATATGGAGATATTAAAAATAGATAAAAATACATTAGAATAATATGCAATGGATTCTATCCCTTTTTCCCCACTCATTAAGTTGTACCGTAAATGGAGCAGCAAGACCTCTGAAACTAGGATTGACATCAGAAGGAAAGATTAACATTTGGAGTTTTTAAATTCAGTCAGATGTCCCCATGGAGTGTATGTTCTGATTGTTACTCTGGCTGGTGACTATAGGGGATTGGGTGTAAGATTCAAGGTAGTTTTTTCAAACCTACAATGACACTCTTGCACATAATTCAATAGAATCTTTCTAAATACAGTGTAAAAATTTGTAATGACAATGAAAACATGTGAGGAGCTGTTCTACAGGGGTATTTCAGAGGGCTAGATTTTATTCTAGAATTTACCTAAGCCACTATAAATGTGAGGCATAACAAAAGAGACAACAATACTTGTGTATTTCTACCCTTTACTCTTGAAGATATTATGTTATACAAACACTTAAAGCATTGCATGTAGTTTTGTGTTCATGAAAAACTGATGAGTGTGTAAAATTCTGTAAACATCAAAAGAAGATGTTTACTGGGGAAAAACTGAAACACAAAGAATAAGCTGATCTGAGTGCAGCCATGTCGCTTCCAACTCAGGATATTCTATGATCCTATAAAAGTCATTGTGAAGAAAAGGAAATGGCTTCCATATGAGTAGAATTTTTGATAAATGTTGTCTTTGAACAATCTCATACACTGCAAAGCTGGGTCTAAGTAGTTTAAGACAACAGAAATAGTTAAATGTCAGCAGTATGCAAGGGTTTAGAAGGGAGAAAAAGCTCTATCCAAACTGAGTTTCATATTCATTAGAGAGGTAAGTATTAAAAATGTTGTAATAGCAAATATCAGTCCAAGAAATACTGGCCAGTTCCTCTGTTTAGCTCAAAACTTGACTGTTGAATCTCAGGCAATCTGATCACATACTGTGCTGACAACTGACATTAGCAACCGTCTGGTGGAGAATATTAATGTTAAGATGTTCTTTCTTCAGTAATAGCCAAATATATACAGTCTTTGATAACAAATGTCTTTCAAATAGTGTACTTTTTTCAAGGTACATTTCCTCATATTTTTACAGTAAGTAAAATTAAATTTCATTTAAGCATGATTTGTGAAGAAAATATGACTTAAAATATCATGTTGGTCTCAGTACTAAATAAGAAACTGAATTTCAAACTGAAGTTCTGTATGTTGTTTTCTGTTGTGATGGAAAATTGAAAAAAATATCGATTGCATATTTGGACAGAAATGCAAAATCTGTCCAATCTTTTAAATCCTAACTATTCAGACAGTTCAATATGTAATAACATATTGATGATTCTTATATATAGCTGTAGTTTGTGTAAGCATATGGACTAGTAGCCATTGTATTTATTTTCCCCTTTTTTATCATTCCCATTATTACTAACTATATCTTATTTGAATTAAATTATTCACACTCAGACCCTTTTATTCAGTATTTATGCAATTTGTCCCCATTCTTCCTTTGTATATCAGAAGATTCCAAGATTATTGCAGATCTTGGAATGAAGGAACAAAAACCAAAGAGAAATAATATTCTGTTTTCTATACACAGAGGTTTTATAGTCTCTTTCCCTAGAGATTTTCATGATCTGACTGGAGAAAGACCTGAGAAGCCTCATCTGTCCCCAGAGCTGACCATGCTTTGATCAGGAGGTTCACTACAGAGCTCCTGTGGTCCCTTCTAAGCTTAAGTACCCGATGATCCTATCATTATCTTTAGTAATTGCCCTGTCAGTATGAGATGTGTAGCATAGCACACCAGTAGGAAGTGTGTTAGTGTTATTTCTTCTATAATTCACTTAAACTTGAAACATACTTCTTAATTTTAATTTTTAAATGGTTTTATTTTGTGAAAG
Seq C2 exon
GTCAGTGTGAACCAATTACTCTGGAACTCTGTATGAACTTGCCTTACAACTACACTAGTTACCCAAACTACCTGGGGCACAGGACTCAGAAAGAAGCTTCTGTCAGTTGGGAGTCTTCTCTCTTCCCAGCCTTGGTTCAGACCAACTGCTACAAGTACCTTATGTTTTTCGCCTGTACAGTCTTAGTACCAAAATGTGACCCCCATACAAATCAACGGATCCCACCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014144:ENSGALT00000022884:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139217=Fz=PU(64.1=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]