HsaINT0040228 @ hg19
Intron Retention
Gene
ENSG00000145244 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:19012]
Coordinates
chr4:47667049-47676517:-
Coord C1 exon
chr4:47676410-47676517
Coord A exon
chr4:47667281-47676409
Coord C2 exon
chr4:47667049-47667280
Length
9129 bp
Sequences
Splice sites
5' ss Seq
GTAGTAAGT
5' ss Score
8.01
3' ss Seq
TGTGTATGTTTCTTTGTTAGGTC
3' ss Score
9.67
Exon sequences
Seq C1 exon
TTCAGACTTCATGTCAAGAAGGAGACCAAAGATGCCTCTACAATCCCTGCCTTGATTCATGTGGTGGTAGCTCTCTCTGTGACCCGAACAACAGTCTGAATAACTGTA
Seq A exon
GTAAGTACAACAGCTGACAAATGCAATAGCCATGTCAGGGCATGCATTCAGCATTTTTCTTCTGCATTGACATTCAAATACTGAAGTCTGGAATCCCTCCAAAAAAGCCTACCTATTTTCTTTTTCTTTTTAAAAGGTCGCATGTGGTAGCAGTAAAGAAACCAAATGGTCTTAATTAACTTCAATCAGAAACAAATGTGTCATTGCGAACGCCTATAAGTCCACATTGCTTAATATCATTACCATTACTTTCAACTCAGCATTAGTTCTCTGTATTATTTTCTTGGCTCCATCTGTAGGCAGATGCTATCTTTCTTCCTTTTTAAAGCATAGCTTCAAAAATGGAAACTTTAACCAAGAAGCAAATATGAAGTTCATAGAAATAGCCACATACAACTTTGGCAATCTGTTCTGTTTTTTTTGAGACACACTCTCACTCTGTCACCGAGGCTGGAGTGCAGTGGCCCCATCTTGGCTCACTGCAACCTCTGCCTTCCAAATTCAAGTGATTCTTCTGCCTCAGCCTCCACAGTAGCTAGGATTACAGGCGCTAAACACCCTCAGTGATCCATCTGCCTGGGCCTCCCAAAGTGCTGGGATTATAGGCAGTCGGTTCTTTTAATGAAATTTATTCTCGCCTTTCCAGGAACTCTGATGACCTGTAATGGTTTCGGAACCATTAGGCTAATTTGTTTCGGTGACAGTGTAACAGCTCCAAACGGTGTAAGCAGGTGGCTCTAAAATGACTTTCAGGAGGAGGAGTTATTTGGGGAAGACAGAATGGGCGGAAGTGAAAGAGCACCCTATGGACTCTCATGGAAAATGGAATCAGAAAATCCCCAGCGACTGATTTCTAGTAATGATTTCTGACTCCTGGGCTCTGTTTTCATGTTATACTCGCTTCTTTCACTTTTTCTAATGAACTTTTTGCTGCATTTTCAGGTTGGGATTAGAAATTTAAAAGCAGGTCAGTCAGTTTTCAGTTGGCAAGAGGATATTCCTTTTTTTTTTTTTTCTGAGACAGAGTCTGGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACGATATCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTATAGGCACACACCACCACACCCAGCTAATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTTTGGTAAAGATGGCGTTTCACCATGTTGGTCAGGCAGGTCTCAAACTCCTGACCTCAAGTAATCCACTGGCCTTACAGGCGCGAGCCACTGCACCCAGCCAGGGTATTACTTCTTAACACATGTCCTCTCAGTCTAAGGCCCTTGGAAGCTGGGATGCTGAAAGTCTTCGGCCTTGCATTTGCTGCAGTTTCGCGGTCCTAATTTTTCTGGGTCACTGTAGAGCTTATAGTGAGTACCTCTATAACTGTTACAGAGTCTCAAGGGGGTGAAAAAAGGAGGCTGGGAAGGGGGTGTAGGCAGGCAGCTAATTAACCCAGACTGACAGGATTGACTGTGGCATTTAATAACTCTTTGCCTGGAAGCACATGCCCACCCCTCCTCCATTTCCCATATGAGAGAACAGTAGATATTAGTCAAGCCACAAAGTCAACACACTCAAACTGCCATTTTACTTCCTCTAAACTGATTTAAATAGAAACTGATTTAAATAGAACATATCTATAGATATGCATATATATGTGTATATATGTGTGTATATATATACACACACACACACACGTATAACATATTTGGGCCACTGTTTCCATTGTTTCATTTTACTCGTCTCTCAATCTGCCGTGGAAATTTTTCAGAGCGATTTCCTTACTTCACCTTCAACTTAAATAGTGACAGTGTCATCTCAAAGACATGTGTTTACTATTAAAGTTTTGGGGGTTGTTTGACATGGAATGACACTTACTATTAGACTCAAAAATGTAGAAAAGGCAATGTTAGCCTGTGTCAAATTTGGGTAGGAAGTGACTGGGTGTATGTTATCCTATTTTCTCTATATTTGAAATATTTCGAATTTTAAATATTTAAAATATGTTGTCTCCTGTCAAAAGAATAAATTGTAGGAAAGGCAACTGGATAACTCTTGGCTCATAGAGCTGACCAATATTTGTAGTGTGTACATGATGTTCCAAGCATCGGGATGGGCGCTGGGCTTTCTAGTGGTGGAGAAAGGAGACAGGCTTCTAGCTTCTTAGAAGTCACTTTTCAGTGTGGGAGAACATATTGTCATCTTCCCACTGATATATTCTACACTGTTGTTCTCTTTAAGCTCTTTAAATACACTCAGTTTACCTAGTGTCTCACTGTGTCACCAGCTTCCTCATTCATCATGTATATTCTTGCCAACTTCTCTCCACATATATTCAGCAAACGTTTGCACCTGCTCTCTTCTGAGTAAAAGCCACTAGGCTAGCCACTTGCCCTCATTACTCCTGTGTTATTAAAAATGGCACATAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGTGATACCCAGTCTGTACTAAAAATACAAAAAAAAAAATTAGCCGGGCATGGTGGCGGGCGCCTGTAGTCCCAGCTACTCAAGAGGCTGAGGCAGGAGAATGGCATGAATCCAGGAGGTGGAGGTTGCAGTGAGCTGAGACCGTGCCACTGCACTCCAGCCTGGGTGAGAGATCGAGATTCCGTCTCAATAAAAAAATAAATAAATAAAAAATAAGGCGTATGTGCCTAACTTGCAGTTGAAAGTCAAGATGTTATTCCTGATCTTTCAAAGAACTTCAAGATGATATATGCATACTTAGGTCTCTGTAAGGACAAACAAGTGGCATCTCAGAAAATCCTTCATACATTTGAAAATATGGTTCATTACTTGAAGATGTTTACCACTATCAAGAGACTAGTATTACTTAGCTTCTGAGGCACAAATGAACAGTAATTTCTTAGTCTGCTTGATGCCAAAGGAAAATTTGAGTTTGGAGAATGTAGTAGATATTCTGTCTGGTGGAGACAGCCTCTCACTGGAGTTGCCGGGATTCTTGTCCTTGAAGACTCTGATTCTTGCCATCCCATAAAATATTATGTGATTTTCTAATGGTCGCTAAAGATATATTGGGTGGGACCCAGTCATCAGTATTTTTTAATTCTACAGATGACTTCAATGTATAGCCAAGGTTGAGAATGTATTGCTCTAGTGCCTATTTATGACTGGGCTGCAGGGGTATGTGAGAACTTTGAAATAGAATATGAAAAGGTTTGTGTATTCCCATGTGCATTTTTCAGTGGAGAAGCTTATTTTAAATTCACAGAAGTGCCTACAGCTTTTTTAAAAAGCCTAAAAACCACATTTCTTATGATACATAGTTTTTTCAAGAAATAGCTTTTAGCAGCCTGTGTTGCCATGTCCAGTCACAACCCAGCATCTTTAACATTTCTGTGCCATGTTGGGAGGCAAAATACAGATGTGTCCTTGCCTTTGAGGGTAGGAGCAGGAATGCTATTCTCCTCATTCCGGTGTGGAGGGACTAATCCATCACTTCTCCCTTGTGGTATGCAATCCAGACAATGGGGAGAACCTGCAAAAGCGACTCCTGGGCATGTCTCTCCTGCCTCCCTGTGCCCATGCTGACCATGGCTGTGAAATCCAGGCATGGCTGTCATGTCCCAGGCCCTCTCTCAAGCCTCCCACAGTGTTCGTCAACCTTTAGTTTTACGCTTACTCGTGCATTTTCCCCTCTTATTCAACACCAAGGAAGAAATGAACAGGTTTGCTTTTTGAATAATTCCCTAAGGGTCTAGCAATTTCCTACTCTCTCTTTGCAAGCTTCAGTTGGTAGGAGTAAACGGTGTAGTCATGTGGTAGAGAAGCCAATCACTATAATGGTTACAGACTTCTGTCCTTAGGAGCAAATAGTAGAAGAGAGGAATGATGTATTTACAAAAGCATTTCCATGTGCATTTTCTAATAAGTGAAAAAAAGATTGAATACAATATTACCATTTGGTAACACGTTGAATTAATGAATGAAGACATGGAGCATCTACAGCTGCTAACATCACAAAAAGAGGGAAATCAGAATGATGTGGCTTCTGGTGAAAGAACAGCTTAGCCACTTCTAGTCTTGTGAATGGAATGAAGCCCAGCCCACTCTTGTTGATTCAGCTGCCGAGGTTCAGAAATAGAAAGAATGGGGAACGTGTTTAACTTCACCAGGAGTGTGCGATAAGCAAGATTCAAAAGCTGGTATACCCTACAAGTCAAATGTCTGGGTTCTTCTATAGTTAAATTATAAAGAAAAACAAAAGAATGGAGGAGGAACCCAAAGACTACGAGAGACTTAAAAGACAGGACAAGTTTCAAAAAATGGGCAAGCCTAAATTACAATATCCAGGGGTGGTACACACTTAGGTAATAAAATTATAAAGAAGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCAGATCACAAGGTCAGGAAATTGAGACCATCCTGGCTAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAAATTAGCTGGACGTGGTGGTGGGCACCTGTAGTCCCAGCTACTCGGGAAGCTGAGGCAGGAGAATGGTGCGAACCCAGGAGGCAGAGCTTGCAGTGAGCCCAGATCGTGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTGTCACAAAAAAAAAAAAAAGCATATATATATATATATAGAAGAGCAAGGAAGTGAGACAGTTGAGATAAGACAAGATATATGGAAGGTTTCTGCGGTGTCTGCCTGAGTTCAGTTTCTTGACCTGGGAGGTAGTTATAAGGATGTTCACCTTAAAATAATATCAAACTATTAAAAATAATAATGTTAAAGAGGGATTTAGAGTTTGAGGCAAAGATGAATTTTTGAATATTATTATATACGCAGCTAGATGTAGAAAAGTCACATTTTTCATGTAAATGACCATCGCTTAATACATGATTTCTAGTAACTTCAGAGTATCACATCATAACGATATAACACCATTGAGTTAACGATCCCATCTTTAGGTTGAATTGAACGAATCTTGTTACAGACTTTGAAAGGTGGAATACCATTGAGATTCCATCAGGATTTTTTTCTTTGACAGATCTTTATTAAACCTCATCTGTGTTCGGGACACTGTACTGGGTACTACATCAAACTTATATCGGAAGCACAGTTCTGCAGCCCTAAAATATCCTCACGTTTGTGATGCGATCTCCCTCTAGTGGCGATTTTTAAATCAGGATCACACATGAGCCTAATGCTTAAGATAAAAAAGCTTATTGATATCATAAATCATAGAATTTGGGGTTGACAGGTATTTTGAGAGTTTATCTTGCTTAGCATTCTGTGAAGAATGCCTTTAAAGGAATAAAACTCAAGATCCAATAAACCTTACCGAATTCAATAAAGATCTACAGAATAATATATGATCATTACTTAATCCTTTCCTTTTCCTTGGCTCCTAAACACTTAAAAGTTATGTCTTAACCCAAATCAAAAGTGATACATTCTCCACATGTAAAAAAGAGAAAAATTATTCATGCGATATGTTCTGTTAATCATCTTCAGTGAAATACATCAATAAAAAGTTGAACCTTGATGGGGTGGTAGAAAGAAAGAAACGGAGGGTATGCACAAGGAAAGAAAGGACTGCATCAGAAATATCTGTAAGTGAACCAATTGTGTAAAATTTTAAGTATATTAAAGATATCAGGAAAAAAGCATAGAGTTAGAGCTGCATGTGCTGACTTGTAAGATGGTCATGACAAATAAGCAACAAAAGCAAATTGAAGGGTGATAGGAATGGTATGCTTCTGCTTTGGCAAAAGCAAACAGAAATCCCTGTCTAAGTGTGCAAAGGCATGTATGGATAAATGTGAGCGGGGAAAGGCATGGAAGCATTCAAAGCCTTCTGTTGGCTTGCAGGGAAGGTAACAGAAAGGGGAGTGGAGAGATGTTGAACTTTTTCTTTCTGCATCTTTGTAGTGTTTTTATTGTTATGAAAAACATGCATTTTTAAATCTTGTAACAAAATATTTAAATGTTACTTCTTGTCTTAGTTCAGACTGCTATAACAAATCATTATTGCTTATAAACAACATACATTTATTTCTCACAGTTCTGGAAGCTGGAAATCTGAGATGAGGTTGCCATCATGGTCAGGTTCTGGTGAGGACCCTCTCTGGGCTGCAGATGGCTGACTTTTCACTGTATTCTCACACTGTGAAAAGAGAGCGAGAGAGATCTGTGTGGTCCCTTTTATAAGGGCACTAATCCCATTCTTGGGGGCTGTACCCTTATAACTCAATCACCTCCCAAAGCCTCCACCTCCTAATACCACCACATTGGAGGTTAGGATTTCAACATATGAATTTTGGGGGAACACAAACATTTAGTCCATAATGTCCAACCCCTCCTTCACAAATCACAGGAAAGGATAAACTGAACCGACCAACCCCAAACCTCTTCCGTCTAGTCTTCTCTCCACTCTGACTCATCCTCAAGATTATGCCAGCCTTTCAGTGTTGTGTCTTCTTCAGCAAACTGAGAGTCATATTGCACTTCATGCATCATTTTTTTTTAATCAGGCCAACATCAGCCTCCTTATAAATATAATATCTGTGATATCCTCGGATTCTTTCAATTAAGAAGTAGTCCTGGAGATGTTTTAATATTTCAGCCCAGTCCTTATTGCAAATCTATTTGCATGGATACCACTTCTTAGTCAAATAATTAAATTTAATTTGAATAATCACTCTCAATAAGGCATGGAGTCTTTGGTCTGCCTGGGCGAATTTTACCAGGACACTTGCTTGCCTGCCTCTCCACACAGGGAATGTGGCATATCTACTGCAAACAGAGAGAGGGAGCTGGGAGCCTCTCTGCTGTATTCCCCCAAAGCTGCCCAAACCACATTTATCATTGGAAGGAGTGTTAGTCTGTTTTCACGCTGCTGATAAAGACATACCTGAGACTGGGCAATTTACAAAAGAAAGAGGTTTAATGGACTTACAGTTCCACATGACTGGGGAGGCCTCACAATCATGGTGGAAGGTAAAAGGCACGTCTCACATGGTGGCAGACAAGAGAAGAATGAGAGCCAAGTGAAAGGTGAAACCCCTTATAAAATCATCAGATTTTGTGAGACTTATTCACTACCATGAGAACAGTATGGGGAAAACTGCCCCATTATCAGTGATCTCCCACTGGCTCCCTCCCACAACAAGTGGGGATTATGGGAGCTACAATTCAAGATGAGATTTGGGTGGGACACAGCCAGACCATATCAGAGGGCTTCCCAGTTCACTCTTGCACTACCTTTTCCCTTTGGACTCTAGCATTTTGTTCAATATGTCTGTCTTAGTATGTTCAAGCTGCTACAATAAAATGCCATGGATTGGGTGGCTTAAATGACAAACATTTATTTCTCACAGTTCTGAAGGCTGGAAGTGCAGGATCAGGATGCTGGCAGACTTGGTCTCTGGTAACAGGCTGCTTCCTGGTTTGCAGACAGTTGCCCTCTTGCGTTTCCTCACATGGCTGAGAGAGCGAGAGCTTTAGTCTCTTCTCCTTCTTATAAGGACTTTAATCCCATATAAATGCCACCCTCATCTAGACCTCATTGAAACCTCATCACCTCCCAAAGGCCCCACCTCCAAATACTATCACATTGCAGGTTAGAGTTTCAGCGTATGAATGGAGATACACAAATGTTCAGTTCATGCAAACTCTATCCTACCCTGTTCACATTCTACTACAGCTACCAGCGCGTGCATCCTTTTTCCTATCGAGATTGTGGAGTTCCTCAGTGGCAGAGACAATATTTCTCATTACTCTTACATTTACATTGCCTAGGATAGTCCCTGATACATTTTCCTCCCTTCATTCTGGCACTGTGCTAGGTGTAGACTTCAAGATCAAGAGATAAAGTCTCATTTCACAAAAATCTCAGGATTGTGTAGGGGAGGCAAGTAAGTAAATAAAGAATATGGCAGAATGCAATGAACATATGGTGGGTATGTGCCTAAGACGCTATTGCACTCACAAAAGACTCATTCTGGAAGTAGTAATGGGAAGAGTGGTTGGCCAGGAAGGTTTCCTGGAAGAGGTATTTGTGCTGAGTCTTCCAGACCACAGAGGAGTTAGCTTGTTGGGGAAGATGGGAAAGGGTTAATCCAGGCAGCAGGTGCCGTATGGCCCTGGCAGCTAGAACCATGACCACCTTTGGGGAGATAATTATGAGCATGTTATAAAAGAGGAGGTAAGAGAGGAGCAAACAGGGTGCATAAAGTCATACAATTCTTAAAATATCTGGTGTCATAAGGGAATAGAATTTATTACAGCAGAGATACTGTTGATTGGATAATCACAGGCAATGAAGCTGAAAAGTTAGCCTAGGGTTGAAGTATAAAATAGCCTCAGACTTCAAGCTAAGGGGTTTGGATTTTGTCTTATTAGTGAGAAGTATTCAACAGATCTGAGCCTCCTCTTGCCCTGAAATCTTGTAGCCTTATATTTAAACACATTAATCAACAATAAAACATATAGACAGAAGTTATCTACTTGCCTATTTGATCAAATTCATTAATTAGTTTAGTGACAGTGAAGATGATGGGGCTATCCTATTTTAGTAGTAATAAGTAAATCAGAAGAAGAAGATGAATTGGAGTCAATAAAAGGAATGATGAAAGAGAGTCATCTTTAGATAAGTTGAGCCAAGGGAAAAAATGAGGAAGGACTTTCTAAAGCAAGATGTTGTCACAGTGCTAGCAACTACATATACAGAAATGAATCTTAGTTGCCAGGGCACTTCACTAATCAACTTACTTATTTTCAATATCCATAAAAAATGTTATATACTACTGGCATTCTAGTCTTAGCTACTCTAAAGAAAGAATAAAATAGACTTCAAGTTTGTAAAACTTAAAGAAGTTGTTTTTATATGTGAAATTTAAAAATATTTGTGTGTATGTTTCTTTGTTAG
Seq C2 exon
GTCAATGTGAACCAATTACATTGGAACTCTGCATGAATTTGCCCTACAACAGTACAAGTTATCCAAATTATTTTGGCCACAGGACTCAAAAGGAAGCATCCATCAGCTGGGAGTCTTCTCTTTTCCCTGCACTTGTTCAAACCAACTGTTATAAATACCTCATGTTCTTTTCTTGCACCATTTTGGTACCAAAATGTGATGTGAATACAGGCGAGCATATCCCTCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145244-CORIN:NM_006587:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139217=Fz=PU(64.1=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)