RnoINT0040931 @ rn6
Intron Retention
Gene
ENSRNOG00000002302 | Corin
Description
corin, serine peptidase [Source:RGD Symbol;Acc:727887]
Coordinates
chr14:38421728-38429984:+
Coord C1 exon
chr14:38421728-38421835
Coord A exon
chr14:38421836-38429752
Coord C2 exon
chr14:38429753-38429984
Length
7917 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
CTGTGTGTGTTTTTTGTTAGGTC
3' ss Score
10.2
Exon sequences
Seq C1 exon
GTCCGACACCGTGTCCTGGAGGAGATCGGGGTTGCCTTGACAGTTCCTGTGTCGAATCCTGTGCTGGTAGCTCTCTGTGTGACTCAGACAGCAGCCTGAGTAACTGCA
Seq A exon
GTAAGTACAACAGTCGACACGGGCAATTTCTGCGACAGACCGAACATCCAGCCTCTTCCTACCCCACTGCCATAAACTCCGGAAGTTGGAGTTTCTCTGAAAAAGCACATAGATTTGCTTTTGCTTTTGTCCAGAGTTTGCATGTGGTAGCGGAAAGGAACCAAAATGGTCTTCATTAACTAAATAAGAAGCAAATGTGTGGTTGTGGATGGGTCATCCATCCACATTGCTTAATGCCATTACCACTGCATTCTCCTCAACATCAGCTCCTATAAATTATTCCGTGCACTCGTCTGCAGGCAGATGTTATCTTCCTTCTTTTTTTAAAGCACAGCTTCTAAACTGGAGACTTCATCCAAGAAACAGATAGGAGAGTCATCCCAGTCGTCACATAAAATCTGGTCATTTTATGCTTCTGATAGATGCCTCCTTATCATTGCAAGCATGATGGTGGACTATTATGGTCTGGGAGTCATTGCACTAATTTGTCTCATGGACAGTGTGGTGGCTCCAATGGTGAGAGCAGGTGGCTGTCTCTAAATTAGTTTTCAGTAGATTAGCTGAGGGGAGACAGAATGGCCAAGAGTGGAGAATATCAAATAAACTCCTGTGGGAAATTTTAACTGAACTAGAAAATTTCCAAAGACTGACTTTTAGAAATGATTTGTTCCTCCCAGATTCAGTTATTATATCACTTCTCTCATTTGGAGTAATTAATTGTCCCATCCTCAGCTTGGATTAAGAGTTACTCCCTATTACGTACCCTCTCCGTCAAGGCTTTGGCTAGTAGACTAAGTGGGGATGGACTTCCAGTGGCCTTGTAACGTTTGAGGTGAATTGTATCCCAGGATATCAATGCTCACAGATGCTAAGAAACTCTTTTCCATATACCACAAACACTGAAAGATCATAGCTCCTGGGTGTTTGACACTGGCTTATGCATTGGTCCTTCCATTATTGAAAGTGGCTTCCATACCTGACTTCCAGCCGTCTCTCAAGGAGTCTCTGGGTAGATATCTGTGCCTGATTCTCTATATAGATGGCTAATAGCATATCCCCTTGTCAGTCTGTTCCTATACATGGGAATGTGATTATTTTATAATATTTAACACCATTAGCATCGATAGTGTTTAGCTTCTTGATCTCCACCCCCTCTATGATATTTGTTTTTTCCAATTGGAATTTGCAGAGAGAACAGGTAAGAAGTTATTTGAGGAAAAGTCACTCATTTGTTCCTCTTTTCCCCTTCACATCCCCCTACTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCCTTCTTTCCTTCATTTCTTCTTTCCTTCTCTCCCTTCCTCTTCCCCCTTAGCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTGTAACAGGGTTTCACTATGTTTCTCCAACTGGGCTGGAACTCTATGTAGACCTGGCTGGGCCTCGCACTCATAGAGATATGCTGGGTTTTGCCTCCTGAGTCCTGGGATTAAAGACACGTGTCAACCATATTTCTTTCTCTTCTTCAGTGCAAAATTAAACAGAATACAGAGGGAAAATGAATGAATAAACACATAGACTGTGGAATATATTAGTAAAGCTGAATACTTAGCACAAGTTAACAGTACTGTGTCTGGTTTGATGCCTTTGACGTTGTGAATGACGAAAGTTGATATTCATCGGGCTAAGCCAGCACTTCACCAAACCTCCTTGGATTCTAGTCTCTGAAGATACTAGTTCTTGCCATCTCATAAAAATTACACCATTTCCTGTGCTCTCTGAAGATGCACTGAGAGGACTCAGGTCTCAGGATGTCTTATATGTCCTCGGTGACTCCTGTGTGAAGCCATGGTTGACAAAGCCATGGTCTGCTTCTGACTACATGAATGTGTGTCGCCTCTGATACTGGATGTAGACAGTTTTCGTATTTCTCTATAATTTTTATTTTCACTAGAGCAGTGGTTTTCAATCTTCCTAATGCTGTGACCCTTTAATACAGTTTCTCACATTGGGTTGACCCCAACCATAAAACTATTTTTATTGCTACTTGATAACTCAATTTTGTTGCTGTTATGGGGTTGTAATATAAATATCTGAGTTTTCTGATGGTCTTAGGTGACTCCTGTGAATGGATCATTTGACTCCCAAAGGTGTTGTGGCCCGCTGATTGAGAATCACTAATCTAGCAATAGCCCATAGTTTACTTTCCATTACTACAAATGGAAGAAAGGAGCAAGCACCATTACAACCCAAAACCTCGTGTTTACATCTCCGCAAGTGAGAGAATGTACTGAAATGCTTACAGCATCACAGGAGAGGCTTTGAATAGCCTGGGCTATTCTGTCCAGTGCCTGCCTGGCATCTTGACATCTCCATGCCTTGCAGGGAGCAAATTTCAGACATAGCCTTGCATTAGGGGGTAGAGGTCAAGATGATGTTCTCATGGCACAGAGAAACCAATCTATCACTTTTCTCTCAGAGGGGAAAGCACAGGCAACGGGGGAGGGGGGACAAGTTGGAAAGAGTTAGTCCCACATTTCCTCTTTCTACCCACATTCATTGAGACCCTATGAAACCTGGGTGGCTGTCATGTGTGTTCCCGGTGTTCTATTTGCCTAGACTTCAATATGGCACCTCACCTGTTCTCTTACTCTACTTTCTAAGGCTCTAATTGAACAGCGAGGAAGATGAAGGGATGAATAACTTTGCCCTAGTTATAACTCCTTTCTCACCTACCATTTCCTATCTGATCTTTACCAACTCCACTTGGAAGAAACAAATAGCCAGGGTGGTTGGGGGGGGCATGATCAAGGCATCAAAATGGTGAAACACTTCAGTTCCTGGTAGAAAACCAGTAGATAGGCAGAAGATGCTGTTCTACAAGTATTCTCATCTGCTGAGTGAGATGTAGATGGCATATTAGTACTGGGTGACAATTGATTGATGAATCAAGGCATAGGACATCTACAGCTCTTGACATCACAACAAGGAAGAATCAGATCTCATGTGGCTGCTGAAGAGAAAACACAGCAGCAGTCCATCGTCCTGTCAAGGCCACGAAAAGCCTAGGCAACCCTCCTGGTTCTGTTGCCAAAGTTCAGGTAGCTCACAGACTATGCTAAATAATAGTGATAGATAGGGGTCTAGAGCCTGCAGCAGAGAGTGTCTGGTTGGTGCGGCTAGATGTTGAAAGTGTCACCTTTTCCTGTAAATGGTCATCACTTTAGAACCTGGTTTCCAGTGACTTTGAAAATCTGTACCATGTATAGCTCACAATCTCATTTCATGTGGAATATACCCACTCTTGTTGCAGACTTTGAAAATGAGATGCTGTTGACAGAAACCAGGCTTTTAAAAACAGGCATTTTATTAAACCTGATCTACAGGACACAGTGAGCACATGTCCAGAGCTTGACCAGTCGATCTACATTAAGCATCCTTGCATTTGTGACGTGATCGCCCTCTAGTGACTATTTCACACTCAGCTCGAAGTTCATGCTTAAGCTGTAAAAGAGAAAGGAGGGCCCAGGAAGTTGAGAGGTCTGGTGGGTTGGGGGATGGGCTGTGAGGGGTGGGATGGGGAGAGCCTCGTGGAGACAGGGGTGGGGTGGAAATATGGGATGTGGGATAGTTAGAAGGTGGACTGGGAGGGGAATAAAATCTGGAGTGTAAAAAAAAAGGATTAAATAAAAAAAGGATATTACATATATATGAAACTTACTGATCAAAGCCACCAAATTTGGATTGGATGAGTTATCTAAGAGTTTAACTTATTCAGCAATGTGTAAAGAATGTCTTTTAAGAGGAAAAAGCCCGTAAGCTCCAATCCTTACTTTATTCAATAAAGATCTCCAGGATAATGCATACTCATCGAATAATGTTTCCATCACCCTTGGCTTCGAAACACTGAACGTTAGGCTCTGACAAATCAGAAATGACTCTTTCTCTATACGTCAGAACAGAGAGGAATTATCTATATGCTACTATCTGTTAACCACCTAATTAGAACGCATTGATAAAAGTTAAACCCTGGTAGTGCGGTAAAGGAAGAGAGGGAAAGAAAAGATGTGTAGGAAAGAAGGATTGCCTCAAACATCTCTGTAAATAACTCCATTTTGTAAAATTATAGGTATATTAGGAGGAGAGGAAAAAGGCCTCTTTTCCTCCCCGTCTCTGGCATTGAAGGTGCTTGTGATAAGCCAAGAAGCCTGTTACAAAAGCAACAGGGAGAATAGGGGTTCTGTCTTATACTTCATTGGCAAACACATTTCTGGCAATGTCTGTGTGTATCAGTGTGAGTAGGGAAAGGCATGGGAGTGGCTTTAAAGTCTTCTAAAGACTCTGGGAGAGGAAGAGAGAAAAAAGTATGGGAGATAATGAACTACTTATGAATTTTTGTATTATTTCTAGAAAGGGAAATCTTTTAACAATCTGACCTCAAAATTTGAAAGTTCTTATTGGTTTCACTCTCAGCAGATATAAGTTACTATTAATTAGGTGGCTTAAACAGTAGACATTTATTATGTCATAGTCTTGGAGTCTAGAAACTTGAGGTCAGTGGTGTCAGAATAGCCCATATAATGCCCCTTCTCAGCCACAGAAAGCCAACTTCTTTTTGTATCTGATATGTAATGAGAGAGGGAGATTTCTCTGGGGTCCCATGTGTAGGGACAATGACCTAATTCTCAAAGACTGCTCTCATGACCTAGTCACCTCATGCAGGCCCTATCCCCCAATACCGTTACACAGTAGGGGAGGAGTTAAGCTTATGACCTTGAGAGAATACAAAGGGTCCTTCACACCCTTTCTTCATAAATACAAGAGACAATAAGGACAAAACATTTACTTTCTCTGCCCTCTTGTTTTTCCACCTGTATTTGCCCCACTATGACACCAGTTCTCTGGTGTCATAGCTTCCCCAGGAAACAGAGTATGTCTTGTTGATAACATCTTTAATCTAGTCGGTTCCTTATGAATATTGTATCATGAAGCTCTCATCATCTCTAGATTAATAAGTGTCCTGAGGCGTATTTCATCCCAGTCCATAATACTAATTTATTTGTATCATACCGTAACCTTTCAGACAAACAAGAATTATTTCGGTACCTGCTCACAATAGGGCATGGAATCGTCAGTGCACCTAGGTCGATTTTATAACACATCTGATTGACTCGATTACTCTGGGTGTCAATGATCCCCTTCTGGGATCACTAAGGGAACAGAAACTCTCTACTCCCTTCTCTCAAACCTGCCCAAACTCACCAGAGGCTTGGATTGCCCTGGGTTATTTTATGCTGTCCCTTTGAGCTCCCAGCATTTTGATCAATGTCACCATGTTAGGTAATCCAGGCTACAATGGCAGAGAACCATAGACTTCAAGGTATGAACAACAAATATGTGTGCCTCACAGTTCAAGAGGTTGGAAGTCCATAATCGAGGTCCTGGAAGATTCCTCTCTAGGAAGGTTTTGCTCCCTGCATAGCTGCCAAGAGCTGCAGTCTTGCTATGTTTTCATACGATAGCTTTAAGGATGCTATTCTACAACGAGCTTTCTCCTGTCTTTTACACTGTCTCTAATTACCTTCCAAAGCCCTGCCTCCAGATGCAATACCATTGGAGGTTAAAGCTCCTGCCTATGATTTTGACGGTGAGTGAGACAGGGTCCATGCAAACTTCACCCTGGCCTGTTTACATGTTCTGTAGTCAGTGCATGTGTCTTTTCTTCCAGTTTGAAAACGAGTTTGAAAACGGCAGGGACATGATTTCTTTTTCGGTGCTTAGAATAGTCCCTGACACGCTGCCCCTCTTTTTCTTCTTCCATTCTACGAGGTGAAGAGCTAAAGGTCTTTTCTTTAAAATCTCTGACTGATGTGGAGCAGGCAGGAGAAGGAGCTCAGCGTGCCTAGAACACAAGCGCCCTCACACTCTTCAGTAGGCAGAGGAAGAGCCCTCAGTCAGGAGGTGGTATTGTGCCTGCTAAGATCACATGCTGAAGAGGAGATGATTTACTGAGGAAAATGGAAAAGGCTTAGGCCGGGCACTAAGTTCTAGAAGTACACGGCAGCTGGAGGCGTGGTCCACTTGAGTGAATGATATCAGGGAAAGAAGAGGGAAGAGAGCAAACAGGCTGCGTGAGGACAGATCCTTCTGGAAATACTGTTGTTTCTGACTACAGCACAGTTGATGCCATAGATGGGAACATTAGGCTGTTGTTCAAGAGTAAAGTAGCCTTAGACTCCAAGGTAACATTTGCATTTTATCCTCATTAGCAAGAAGCATCCAGGAGATCACAGCCTCTTCTTAGGCTAATATATTATAGCCTTATCTTTAACTCCATTGGTCAGTAAGAGAGCATAGGCTCAGAAATTGTCTAATTACCCATTTAATAAGCCTCATTGATTTTTTAAATGTCTGTTGAAGATAATAGGGCCTATGCTATTTTAGAAGCAAAAAATAAATGAGAAGAAAAAAGGGACTGAACAAAAGCATGATAAAAGTCATTTTCAGATAAAGTTGAGTCAACTTCTAAAAAATGAGGAAGGGCTTTTTAAAATGCATGTGCTGGCCACACCACACTTGGAAATGAACACGGGTTTGTCATGGCTCTTCTGGAGCAGGGTCTCTGGTTTTGACGTCCATAGACAAGTGTCACGTACTATTAGCAGTCTAGTTTTTGCTTCCCAGTCTCCAGGCTTCTTAAAATTTGCCCTCCTGACCCCTTTTTGTTCTAATTCCAGCTTCAGGTATACATGTGTAGAAAATAGTATTACAACTGTTTACCAATAACAACTCATAAAGTAATTTGCTTTCAAACAAATCCTTGGCATACACATAATTTTACCATTTATTAGAGATAAAGAGCAAATTTGCATACTAATGAGATGAATGGGTTTATTTTTTACATAAAAATTAAATACTCATTGAATATTTGATATGAAACTGGGTGTTGTACCTCATACTTGTAATTCCAGAACTTAGAATGCTAAGGCATAAAGATAGCCTTGGCTTTCTGTCTAACCTGAGCTATACAATGACTTCTAGGGCAAGCTCAGCTAGAACAGAAACAAAAATAAACAGCGGCAAAACACAGAACCAAAACCCAAAACCACAATCACAATAATCAATGCTGTAAGACACGACGTCATTAACGGTTTCCAAAGTTGGTCTAAGTTTAATTCTGTAATTCTCTACCTGGGGAATGCTGCCTTCACTCATGTAAATACATAGTTTAGGACTCTCAGAAACTGTGGGAAATACTGTCCTGATCTCAGGACAGATTTCATAGAACCAGTTTTCATTAAAACTCAAGTCATCCATTCAAGCATTCTAATACAGTATGATCTGAAAATATACTAATTTGATACATGCTGAAGAAAGGTGGAAAATATTGTCTTTATCTCCTGCAATTAAATCAGTTCGTTTCTATAGGAGCTGAAAACTTATTATACACTGGAAAAACATGGTAACTCATAATAGGCCATAGTCTGGGACCTGAGTGGAGGTGTTTCGTGTTTCATGCAGGGTTTGTTGCTGCCACACAGGATGTGATGGGATGTATACTGCAGAATGCATATGTCCTGTGATCAAAGCTACAGTGATGTCACATGATGCAGCATTGCAAGTGTCAGAGAATCTCTGACACACGACACACTTTGTTTTGAGTTCAGCTTTTGCCATTGTACGCTTAGACGCTGTTGTGTCTTGCCAGTTATTTCCCAGGCTGCAGGCATGATTGTGTAACTGGGACCCAGAGTTGTGGAAGCTGTGATCTAAATAGAGTAGACTTTGAGAGTGGGAAGCTTAAAGAGGCTGTTTCTAATATTCAGATCTGTGTGTGTTTTTTGTTAG
Seq C2 exon
GTCACTGTGAGCCCATCACTTTGGAACTCTGCATGAATTTGCCCTACAACCTTACACATTATCCAAATTACCTTGGCCACAGAACTCAAAAGGAAGCGTCCATCAGCTGGGAGTCAGCTCTCTTCCCTGCCCTTGTACAAACCAACTGTTACAAATACCTCATGTTTTTCGCTTGCACCATTTTGGTTCCAAAGTGTGATGTGAATACAGGCCAGCGCGTCCCGCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002302:ENSRNOT00000064128:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0139217=Fz=PU(64.1=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]