GgaINT0072427 @ galGal4
Intron Retention
Gene
ENSGALG00000014144 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr4:66365102-66367059:+
Coord C1 exon
chr4:66365102-66365373
Coord A exon
chr4:66365374-66366925
Coord C2 exon
chr4:66366926-66367059
Length
1552 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TGCTGATTTCTGTTTTTCAGTGC
3' ss Score
9.14
Exon sequences
Seq C1 exon
GAGAGAAAATGCAGCTGTCTGGAAAGTAGTGTTTGGGATAAGCAATCTTGATCATCCATCAAGCTTCATGCAGACCCGACTGGTGAAGTCCATCATCTTGCATCCACGCTACAACAGAGCAGTTGTAGACTATGATATCAGCATTGTACAACTAGATGAAGAAATCAATGAAACGAGCTATGTAAGACCTGTCTGCTTGCCCAGCAAGGAACAGTTGGTACAGCCAGATACCTACTGCTACATCACAGGCTGGGGACACATGGGCAACAAAA
Seq A exon
GTAAGATGAATGCTTTCAGGAATCTTAAGCATGTTAAGCACCTACTGGATTAATCAAATAAGTGATCTCACTACAAAGCTTTATCTATTTATACTAATGCTGGACTTGATTCACAGAATCAAGAATTGTAGGAGTTGGAAGGTATCTCAAGAGAGCATCGAGTCCAACCTCCCCTGCTAGCACAGGCTCCCTATAATAGGTTGCACAGGTAGATGACCAGATGGGTCTTGACTAGCTCCACAGAAGGAGACTCCATGACCTCTCTACACAACCTGTTCCAGTGCTCTGTCACCCTTACTGTAAAGAAGTTCTTCTGCATGTTAGTATGGAACTTCCTACGTTCAAGTTTTAGGCCATTATTCCTTGTCCTGTCATTACACACCAACGAGAAGAGCCACATCCATTTTCCTCCCACCTCCCCTCATATATTTATAAACATTAATCAGATCCCCCCTCAGTCTTCTTTTCCCCAGGCTGAACAGTCCCAGGTTACTCAGCCTTTCCTTGTACAGGAGGTACTCCAGGCCCTTTATAACCTTTCTGGCCCTCTGTTGGACTCCTTCTAGGAGATCATTGTGTTTCTCCCTTCTCTGTAATAGCAATTTTCAGAAAGGCAGTTCTGTACATTGGATAAGGAAATTTTCCTATCAGTATTGCTTCACCCCTAGTAGCTAGGTCCATATACATGGCAAAAACTAAATTGCACTAGTGAGGAATATGCTGTTTAGAAGCAGCTCCGAAACTATCCATCGAAAACTACATTTTATGAAACGGCAGGAAAAAAGTAGCACAGAAAGCTTTTGTACCTCTGGTAAGTAGAAAAATGTTATTTGCTAGCTAATGTGGTTTCAGCTTTGTTTTTAAAGGTTTTATGTTAATAAACTGTAAAAACCATCTTGGCTACACCGGCTTTAGTACTTTATGCTCTAGGTTTAACAGTTTACCTTTGAATTTGAGCTAAGTCAGCTGCTCGCAGTAGGATGAAGTCCTGAATGTGCTGAAGTAATTTCAGTATCCTTTGAAATCTGATTCCCTGATACATTAAGTTGAATTTACCCAAATGTAAGTCATGCTTGTTTTTATAACCAACCTTGACTGCGAGAGATACTAGGATTAGAATGAAGACTTAACCCCCTCCTCTGCTTCACATTACTGCTTTCCATCCAATACTGTCCCCATCATAAAAGTCCCATAACACATCACATAAAGGTACTCTGCCTCCTCAGTCTTCATTATAGTGCAAATGCACAATGAAGTGTGTCAGCAGTACCCATGTGCTCGGTCGTCCTCCACAATGCAACATATGCAGACTTGTCTCAGGAGTGTTCATGAATCCTGCAATGCAAGCATGCCAAAAAAGACCTGCAAACATCTGAGCTTCAATATAGACCTATGTGTTATATATATGTATGTATGTATGCACATTTATATACAAACATATATAAAGTAATATTTAGATTTGTCTAAAGGAAATATTTATCATATCTCAAAGATCCATCACAAATAAATATTTGTATGTCCATATGTATTAATGCTGATTTCTGTTTTTCAG
Seq C2 exon
TGCCTTTTAAGCTCCAAGAAGGAGAAGTGCGCATCATTTCCTTAGAACAATGCCAGTCATACTTTGACATGAAGACTATTACCAGCAGGATGCTGTGTGCAGGCTATGAGTCTGGCACTGTAGACTCTTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014144:ENSGALT00000022884:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAGCTTCATGCAGACCCG
R:
TGCAAGAGTCTACAGTGCCAG
Band lengths:
347-1899
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]