MmuINT0041121 @ mm10
Intron Retention
Gene
ENSMUSG00000005220 | Corin
Description
corin [Source:MGI Symbol;Acc:MGI:1349451]
Coordinates
chr5:72302791-72305146:-
Coord C1 exon
chr5:72304875-72305146
Coord A exon
chr5:72302925-72304874
Coord C2 exon
chr5:72302791-72302924
Length
1950 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTCTTCTTCTTTGAACGCAGTGC
3' ss Score
6.34
Exon sequences
Seq C1 exon
GAGAGAAGACGCTGATGTTTGGAAAGTGGTATTTGGCATAAACAACCTGGACCATCCATCAGGCTTCATGCAGACCCGCTTTGTGAAGACCATCCTGCTACATCCCCGTTACAGTCGAGCAGTGGTAGACTATGATATCAGCGTGGTGGAGCTGAGCGATGATATCAATGAGACAAGCTACGTCAGACCTGTCTGCCTACCCAGTCCGGAGGAGTATCTAGAACCAGATACGTACTGCTACATCACAGGCTGGGGCCACATGGGCAATAAAA
Seq A exon
GTAAGTGAGCGTCATCAGCCATGATTACCCGTTCTGCAATGAGAAGCATAGGGTTACTTTTACGCTTTGCCTACCACTTCCCATTTCCCATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAACCAGCCACATGGTGTAAATACTAAGCTTGTGTTATAGTCTCCCCTCTAAGTCAACTGCACATATGAACCATCCATTATAATGCATAAACCTGCCTGCCTGAGATGCAAACTCAAGCATCCTTCCACACAGCTCTGATCTTTCTCCAGAGGGCTATTACCAATGTTTTTGAGTTTCCAAGCAAGGTATGACCTGCCCAGCATCCCTGCTAGAGAGAACAGTGGTTTGGGCTATCTCTTGGCAGAATTTCTCAGAGGCTGTGTGGAATAACTAGGCAATTCCATTTCTACAGTCAAGCTACATAGTCACACTTTCAGTTTTGCAATCGATTTGTTCTTATCTACATAGGCAGCATATCCTTCTATGAAGAAGTGTGATACATATCTACCTATTTAAATTGCTTCAATTGCTTCAAATTGCTTCATGGAAAGTGATTTAAACACAAAACACATAGAAAAAGTTTGACTTATTTAAAGTTTATAATAAGAGCCGAGAACAAAATAGTTGTGTCATCTGCAGGAGTAGGCCATTCTCTGAATGGTGGCATCTTGATATTAACCACAAGAACACCAATTTAAAGGAACGTGCTATCACTCCTATACAAAAGACCCATGATTAGCATTGTAATAAAATGAGCAGAATATACTTCACAGAGCCTTTATTTGTGTTCACCACAAAATATCTATATAAATTCATGGTAATACGGTACATGACACATATGCCATAGTCAGGGGATAGCATGAAGAATAGGCAAATGAATTCTTTCTGGAATATCAGATTGACCCTGGCCATTCCAATCTCTTGCTTTCTACAGAAAGGATGAGATGATCTTAGAACATATAAGATTGTTATACAAGGAAAATAGCACTGTGACCTCTAAGATGCTCATGATACGAGCCTTGTCTACCCTAGTGTGCAGTACACCATTGACTGCTGTGCTCATTATAATCCCGATGACATCCTTCTGGTTTGTTAAGCTTGTACTCTATCATGTTTGTTTTCCCCAAATGATTATTATTAGTACTGTTTCCCCATCATGGCTTCAAATCTGTATGGCTTTTAGGATGTGCAAATAAGATGTATGAGGTTTTGCTTGCAGACAGCCACTGTTATTCTGAAGAAACTTTAAGCAAGGCAGAAGCCATATATTCCATCTATTGTAAGCAAGAGATGATGCTGTCCCTTTCAAAATTTGTCACAGCCTCTAGGATGAAAGGTTCCACATCAGATCAAGGGTCACAGGGGCACGTGTGAGGTGGGCCAGTTCCTGTGAGGGTCAGAAGCTTTTCTCGAATCCTAGAGCAGGATGAATGTGCTAAGCTAAAAACTGCCCTGTCGTCCTCCTTTCCACAGCACATGACAAGGGGACACCTTTCCTAATGTTGTGACCCTTTAATTCATGTTCATGCTCTAGTGACCCCCCAACCATACATTTTTATTGTAACCTCATAACCGTAATTTTGCTACTGTTATGAGTCATAATATAAATATCTGATATACAGGATATCTGATATGAAATCTCTGTGAATGGGTCACTCAACCTCCATAGGGGTCGTGACCTATGGGTTAAGAAATTCTTACTTGAATAATGTGTCTCACTAGAAAAATAGGAGCGTCGTCAGATAGATGATTGCTATCAAAAGTTCTAAGCAGAACATTTGGGTTTCAAATAAGTCTTCCCCTTGAGATGATATTTAAGGGAATTGATGTGCTTCTCTCGGTGTTATGAAAATATTCCTGCAATATTTTTCATTTTGTATTTTGCTGGCCACGCCTTGGTCAGTCTTATGCTCTTGTGTGTCTCTCTTTCTTCTTCTTCTTTGAACGCAG
Seq C2 exon
TGCCCTTTAAGCTGCAGGAGGGAGAGGTCCGCATTATCCCTCTGGAGCAGTGCCAGTCCTATTTTGACATGAAGACCATCACCAATCGGATGATCTGTGCTGGCTATGAGTCTGGCACCGTGGACTCCTGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005220:ENSMUST00000167460:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCATCCATCAGGCTTCA
R:
TCCACGGTGCCAGACTCATAG
Band lengths:
349-2299
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types