RnoINT0040942 @ rn6
Intron Retention
Gene
ENSRNOG00000002302 | Corin
Description
corin, serine peptidase [Source:RGD Symbol;Acc:727887]
Coordinates
chr14:38470073-38472153:+
Coord C1 exon
chr14:38470073-38470344
Coord A exon
chr14:38470345-38472019
Coord C2 exon
chr14:38472020-38472153
Length
1675 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
TTTCTTCTTTTTGAATGCAGTGC
3' ss Score
6.35
Exon sequences
Seq C1 exon
GAGAGAGGATGCTGATGTCTGGAAAGTGGTATTTGGCATAAACAACCTGGACCATCCGTCAGGCTTCATGCAGACCCGCTTTGTGAAGACCATTCTGCTACATCCCCGTTACAGTCGAGCGGTGGTAGACTATGACATCAGCGTGGTGGAGCTGAGTGATGATATCAATGAGACAAGCTACGTCAGACCTGTCTGCCTACCCAGCCCCAGGGAGTTCCTAGAACCAGATACATACTGCTACATCACAGGCTGGGGCCACATGGGCAATAAAA
Seq A exon
GTAAGTGAGTGTCACCAGCCACGATTGCCCATTCAGCAACGAAAAGCACTAGGGTTGCTTTAGACTTTGGCTACTGTTTCCCACTTCACACGTCAAAACACAGCCACATGGTGTTCGCTCGTCTAAGCCCATTGCAAACATGGACAATCCATCATAACATATAAACCTGCCCACCTGAGATGCACACTCAAGCATCCTTCCACACAGCTCTGACTCTTTCTCCAGAGAGCTACTACCAAGGTTTGGGAGCTGCCATGCAAGGTGAGACCTGACAGACATCCTTGCTAGAGAGAACAGTGGTTTGGGCTACCTCTTGGCAGAATTTCTCTGAGTCTGTGTGGAATAATTAGGTGACTCCATTTCTGCAGTCAAGCTACACAGTCACACTTTCAATTGTGCAGTTGATTTGTTCTTATCTACAGATGCAGCAATCCTTCTACGAAGAATTTTGATACATATCTAGCTATTTAAATTGCTTACATTGGGCTTTATGCATAGTGATTTAGACACAAAACACATAGAAACAGTTTGACTTATTTAAAGTTTATAATAAGAGCCGAGAACAAAACGGTTGCGTCAGTTGTAGGGGCAAGCCATGCTTCTCTGAATGGTGGTATATATTGGCCTCCTAGCATTGATATCTTGATATCCTAGCATTGATATCTTGATATTAGCCACAAGAACACCAATTTAAAGGAACTTGCCACCATTCCTATACATGTTGCTTTTTTAAAAACTATGATTAGCATCGTAATGAAATGAGCAGAATATACTTCATGGTGTCTCTCTAGTTGTGTTCCTCACAAAATATCTATCTATATATGCTCATAGTAATAGGGTAGGTACCGTGGCACATATGCTGCAGTCAGGGATAGCATGAAGAGCAGGAAGATGAATTCATCCCAGAAGATCAGACTGACCCTGGCCATTCCAGTTTCTTGCCTTCTACAGAAGGAATGAGACGATCCTAGAACACATAAGACTGTTACACAAGGAATCAGCGGCACTGTGGCCCAAAAGATGCTGATGGTCTGAGCCTTGCCTCCTCTAGTGTGCAGCACACAGAGGATCTGTCATCCTCTGATATCCTCTGGTTTGTAACACTTGTACTACAACACATTTGTTTTCCCCAAATCATTATTATTAGCAATGCTTCCCCATCATGGCTTCCAATGTGTATGGCTTTTAGAATAAGATTTATAAGGTTTTGCTTGAAGACAGCCACTGTTATTCTTAAAAAAACCTTTAGGCAAGACAGAAGCCATATATGCTATCTATTGTAAGCAAGTGATGATATTGTCGCTTTCAAATCTGTCACAACCTCTAGGATGAAAGGTTCCACATCAGAACAAAGGTCAAAGGAGCACATGTGAGGTGGGCCCGTCTCGGTGAGGGTCAGCAGGTTTTCTCTAATCCTAGAGCAGGACGGATATACTGAGCTAAAACTCTCCCTTGTAGTCCTCTTTTCCACACCACCTGACAAGGAGTCAAGCCCTAAGTAGAAAATTTGGCTTTCAAGTAAGTCTTCCCTTTGAGACGATATTTAAGGGAAATGGTATGGTTCTCTAGGTGTTAGGAAAATATTCCTGCAATATTGTTTATATTGTATTTTGCTGGCCAGGTCTTTGCCAGTCTTATGCTCTTGTGTGTTTCTCTTTCTTCTTTTTGAATGCAG
Seq C2 exon
TGCCCTTTAAGCTGCAGGAGGGGGAAGTCCGCATTATTCCTCTGGAGCAGTGCCAGTCCTATTTTGACATGAAGACCATCACCAATCGGATGATATGTGCTGGCTATGAGTCCGGCACTGTGGACTCATGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002302:ENSRNOT00000064128:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(39.7=100)
A:
NA
C2:
PF0008921=Trypsin=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCATCCGTCAGGCTTCATG
R:
TCCACAGTGCCGGACTCATAG
Band lengths:
347-2022
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]