GgaINT0073924 @ galGal3
Intron Retention
Gene
ENSGALG00000011982 | PDE5A
Description
NA
Coordinates
chr4:56221870-56224923:+
Coord C1 exon
chr4:56221870-56221978
Coord A exon
chr4:56221979-56224838
Coord C2 exon
chr4:56224839-56224923
Length
2860 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTGTTTTGTTTGTTTAACAGACT
3' ss Score
9.14
Exon sequences
Seq C1 exon
GGACTGTGATACAAACAAAATCAATTATATGTATGCTCAGTATGTCAAGAATACAATGGAGCCTCTCAACATCCCAGATGTCTGCAAAGACAGAAGATTTCCCTGGACA
Seq A exon
GTAAGTAAAATAACTTTTGTAATTCAGAAATGATTTTTTCTTTTCTATCTACCTTTCAAATCTTCCTTTCTTTCCCCTTAGTTTTTGTTATGTTTTTGTTTTAATTTAATGGTCACCGAATCCTGCAAATACAAAGAAACTTAGAACATTTCCTTTCTAAAATCCATTATCAGTGCAGAAATAGTAAAGTACTCACAAAGTAGGCAGGGTATCTCCACAGCCATTATTAAAAAAGCTTAGCATTAATTTGTGAATAAATAGACACCATGATGTGGAGAGCTTGCAATGCATTCTCTGGAAAGCATTTAATTGAAGAACAGTTGGAGGTTTTCATAGTAATCCTCTGTAGGTTATTGTGATTGTCAGGAGGCTCTCAGAAGTTCCTTCCTTTTTTTTTCTCTCCCTTCCCTACTTATTTTGGCAAAGATTAATGATATGCATGCAAGTTCTTTGCTGTTTTGGATAAGCAACAACTTCACTTTTTTTTTTTTTATGGAAGCTTTTGCTTTACACTTCATCAGATATATGCTTATGTCATGATGACTACTGAACACATACTGGAATGCTAGTAGGGAAGGCCACTTGGCAAGACTCAGATTACAGTCATGGGTGCACTGAAAGTTGTTGTCAATACAGTGCAAAATTGTAATGCTGTGTTTTCCTCTCAATGCAGAATCTTGAAAGAAACTCTTCTTACAAGAGAGAAGCCTGTAAGCTGGGGGGACTCAGGGAGAGAGTAAGAGGGAAAAGTTTTAAGGTGATCAGCAGGTTTTTACCAAGGTCTTTGTTCTGAATCGCACAACCAAGAGTTCAGAAAGTACAACATTGACTATGATTGTACCAGTAGGTGGATAGGAGGAGCAGCATCATGGTGGGGAGCTATGTTGCTTCCCTTTTTCTCTGTGCAAGGTTTCACTGGTGCTCTGGAGTAGGATTTTATGAAGGACAGATCAAAAAAAAATAATTGAGTGCTCACCATAGTGCAGTGCCCAAATTTAACCGCAGGAGTAGAAGAAAAAAAAGAATTGCATTGATGTACTACGTGAAATCATTAAAGAAATAAGCAACTATTTTGAAGACATTTTAAAATACATGAAAGGAATACCAAATGATTGTCTGATACAAAACTTTCTCTTTGTCAGTGGAGTTAGAGTTCTTAAACATTTTCCCTGGAATCTAGATGATTTACACGTTATGCATGTGAAAGAAACATAAAGAAAATAATGTTTTTTAACACAGCCACACTGGCTGCATCTCCACCGCTACATAAGAGAAACCTTAAGGCTGGACTGTAGGCAAAATCTTTTTAAAGCTGACAAACCGTGGCATGAGGGAAATCCCAGGTGTATCTAGTAAATTAAAAATGCTGACTTGCCTCTTTCTTTGGAGAATGTTCAACGGTTCACTTACTTTATAAAAAGGACTTTGTGCTTTCTAAATGCATTGGCAGCCAACGTAGTGACATGAGGCAGAAAACCAGTATAGGTTCCTTCACAGGAGAGCCCTGATGTTGCCTTCTTCAGGTTCAGTACGTACAAGGACAGTATGTAAACCATGGCTTCAGCAGCCATGCATCTTTGTTTTCCCCTGAACCAACAAGGCTAGAGCAGTGGAGATAAAGTTCAAATATCTGCAACACTCCTTAAAGCCATTTGTTCCTGTTCTTGTTTAGTCTCCTTCCTTTTCATTAATACTGGGTCAGATATTTTTTTAAGCACTGTGAACTCTGTTCTTATCTCACTCCATACAAGTTTGAGTTCCAGTGCATTTGAACCTTACCATAAAACAGCAGGTTCTTCTTAGGGTAGCCTTAAACCAATTCACATGCCAACTTGATTTAGTGTTTCTCAATTGCAGAGCACCAAATAGCAAAGCAACAGTAGTAAGACAAACAAACAAATAATTCACCGAACCCCTTTGATCTGAAATATTACTGTGTGCACATCTTTTGTGCCACATACAATTAGAGATTGGCCCTAATTTACTTCTCAGCAACTGCCACGTTATTCTAGAACTAAGAGCTACAGAACAAAACTAGGTCATTTTCTCACCAGAAATTTGAAAAAGATGCCTTGTCATTTTGTTCCACCCATCCATACTTCTACCTCACAAATAAATTCAGTGTCCTTGTCTTGGAGCATGAAACAAACTGATAGCAAAATATACCCAACCTAGAAATGATGAAAGGCCTTTGGAAGACTGCAGAATGTTGACCTACTTGGAAAACTGGTCATTCTTTGGATCATAATTTGGTCTTCACCAAGGCACCTTTCACTGCATTGGTGGGTTAATTAAGGCATCTCAAACAAACCAAAAGGGTTTACAGAATGTTCAGTGTCACAAAATACACAGTTAACTTAATGGCATGAACTCTTGTTTTATAACCTGTATGGCCCTATTGCAAGTACAGGGGAGATGCTAGAGATGGACAATGTCAGATAATTTCACAACTCTTTAACTGGTGAGAGTAGAAAGGTGTCCTAAAGCCTAGCTGGTCTCTTTTCAGCTGCATTGAGTGGAACACTTTGCCTTGGTGCAAAATTGTTGTTGTCATGAAAGTCAAGTGAAAGAACCTATTATAAAATCAACACATTTTCAGCACGATGTTGCAAGTCCCTGGAAAGTTTGAATGGTGATTATCATCATTACTTGTATTATTATTCACCAAAGCTTGTATCAGATGTAATTTTTATTATACCATCCAGCCAACGATGTGCAAACTCTTCAAAGACATGGTCGCTTTCTGAAGGAACATGTGTAAACCAATAATGCAAACCCCAGCTCTGCATTTTCATTTCAGGTACTTAAACACTGGCCTTAAAAAGTGTAACTGTTCTGTTTTGTTTTGTTTGTTTAACAG
Seq C2 exon
ACTGACAGTGCAGAAAGTGTAAGTCAACATATAAAGAGTTTGCTGTGTACACCAATAAAAAATGGGAAAAAGAATAAGGTGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011982:ENSGALT00000019550:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(27.7=100)
A:
NA
C2:
PF0159021=GAF=FE(21.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]