HsaINT0122139 @ hg19
Intron Retention
Gene
ENSG00000138735 | PDE5A
Description
phosphodiesterase 5A, cGMP-specific [Source:HGNC Symbol;Acc:8784]
Coordinates
chr4:120473705-120474901:-
Coord C1 exon
chr4:120474793-120474901
Coord A exon
chr4:120473793-120474792
Coord C2 exon
chr4:120473705-120473792
Length
1000 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TTCTTTTTATTTTTGTTTAGACT
3' ss Score
7.77
Exon sequences
Seq C1 exon
GGAACATGATGCAAACAAAATCAATTACATGTATGCTCAGTATGTCAAAAATACTATGGAACCACTTAATATCCCAGATGTCAGTAAGGATAAAAGATTTCCCTGGACA
Seq A exon
GTAAGTAACCCAATTTTAGACTTGAAGCTAGAAGGCTGTTTTCCCATCACATCTGTACTTACAGTTATTCTTGAACTGAAGGACTGGCTCTAGAATTGACTGTTTAGGAATGATCTGTGCTTTCCCTCATCTGAGGAAGGAGAATAAAATAGATCATAACATCTATTGAGAGCTGTAGCTGGACATTTTTCTTTGTACTTTTTTCACCTTTTTAAATGTCTATTAATAAGTTACCGTACTATTTTTGAAGTAATTTAGCTATTACCTACATAATGTCAATGACATTCCTTAGATAATATTGCTAGAGTTTTTGCCTTATTTGCAAAAATTAGTTTCTGTGTGGCTTGAACTGATGCAATTGGTAATCTGTCATAGTGAGTAGCTCTGGGAAAATGGATGTCTGTTTTTCTTGACCTCAAAGCTACAAATATCTAGTTCTCAGACACTGAAAAATTTGAATTATAGTATTTTCTCTCACCTCTTCAGGAAAGCATTGCACTTTGAGGCAGCTGCCTTGATTTTGTTATTTGGATGATTTTGTTATTTGGGTGTTATTTGGAGACATTGTTAGAACTTTAGCAATATAGCAATAGCAACAGTGGTATTATTAAAGGACAGGTTTGTAACACGGTGCATTTTAGGTGGCGTTTAGATTCTGCCCCTCTCGTTAAATTATTTGGGGCATTTACTACACTAGTATAGTAGATACTGTACTTTTACTTATTTTTTTTAACTTATTTTTATATTTTACTTATTATTAAGCTGCTTGGAAAGTTTAAAGTGAAAAAAATTCCGATATTTTTAACAAAGTAGACATTGCTTTATATTGCATTTATGTGAACTTCATTATAATTTATACATTTTCTGCTTTCCAATGCTCTCTAATATAAAAGTTGAATATATAGTGCTTTCAAATGTGTCATATAGTTTATATGGCATCTAATGGACAAATCAATCTCTTTACCATTTTAGCTGTTTTGTTCTTTTTATTTTTGTTTAG
Seq C2 exon
ACTGAAAATACAGGAAATGTAAACCAGCAGTGCATTAGAAGTTTGCTTTGTACACCTATAAAAAATGGAAAGAAGAATAAAGTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138735-PDE5A:NM_001083:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.054 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0159021=GAF=FE(22.8=100)
A:
NA
C2:
PF0159021=GAF=FE(18.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)