GgaINT0075052 @ galGal3
Intron Retention
Gene
ENSGALG00000005533 | ZMYM3
Description
NA
Coordinates
chr4:2293765-2294634:+
Coord C1 exon
chr4:2293765-2293933
Coord A exon
chr4:2293934-2294518
Coord C2 exon
chr4:2294519-2294634
Length
585 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TGTACTTTTGCTCTTGTCAGAGG
3' ss Score
6.31
Exon sequences
Seq C1 exon
TTGTCATCAAAGACCTCCTCAGCCCACATGTCTCCAGCCGCGCCGCCTCCTCCGCCCCCTCCAGTTCCAGCCACCCCTCGGAAGAACAAAGCTGCCATGTGCAAACCACTGATGCAGAACCGGGGTGTTTCCTGCAAAGTAGAAATGAAGTCCAAAGGATGTCAGACAG
Seq A exon
GTAGGACAGTAAGACACAACTAACTGCAGGATTAAAGGGGCATTTCGGAAAGGAAGATAGCGTGTCTCTGCTCCAGGCTGGATATGAAATACTCTATAGAACTGCTGAGTGTTTGGCATCATGCTGAGGGAGCATCAGGGATGTGTGAGGCATGCACAGCCTTGGATGGAGGTAGAGAGTCCATCAGCAACAAAAAGAGCACTGCAGCATAATTCCACCTCTCACAATATGTGAGGCAGCTCCTTTTCCTCTAGAGATCTTCAGCTTGTCTGAGGGGCTGTCTGTTGAGCAGGTTCCACTGTGAAGCTGCCATTGGGTGTGTGCATGTGGTCTCTAGCATATAAAAAGAAACTAGATCTGTCAGTAGGACTACATAAGAGCAGGGCTTGCAGCTCTTGCTAAGGCAAGCTTCTCCTTCTGCACGGCTGTCTGGCTTACTGCTGCTTCAGCTCTGCCTGTAAGTCAGATGCTGATATCTGGAAGGGCTATGGTGCTGGTTGGCCGTGTGGGCATGGCTGTGCACAGCTAGGGTGGGTAGAGGAGCTGCTGGGAGCAAGCTCACTGATGTACTTTTGCTCTTGTCAG
Seq C2 exon
AGGCTGACTGGAAGCCCCAGGTGATTGTGTTGCCAATCCCAGTCCCGATCTTCGTGCCTGTGCCTATGCATATGTACTGCCAGAAAGTACCTGTGCCTTTCTCCATGCCTGTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005533:ENSGALT00000008873:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.675 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAAAGACCTCCTCAGCCC
R:
GACAGGCATGGAGAAAGGCAC
Band lengths:
278-863
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]