DreINT0181007 @ danRer10
Intron Retention
Gene
ENSDARG00000027353 | zmym2
Description
zinc finger, MYM-type 2 [Source:ZFIN;Acc:ZDB-GENE-030131-2408]
Coordinates
chr9:21628898-21629249:-
Coord C1 exon
chr9:21629120-21629249
Coord A exon
chr9:21629026-21629119
Coord C2 exon
chr9:21628898-21629025
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TAATACCTGCTTCTCTTTAGATG
3' ss Score
7.16
Exon sequences
Seq C1 exon
GGCCCTGTATCGTACGCTGGCGGAGGGATCCTGAAGGATGTGAAGAATAAAGCTGTGCTCTGTAAGCCCCTCACCATGACCAAGGCCACATACTGTAAACCTCACATGCAGAGCAAACCACTGCAGACAG
Seq A exon
GTGAGGATCTTTTTTTCTGTGACTATACAATCTCTGTAATGTATAATCTCTCTCTGGTAAAGATGGAGAAGCTTTAATACCTGCTTCTCTTTAG
Seq C2 exon
ATGAGGCAGATCTGGAGAGCTCAGGAAAGGAGTACATTCCTATTCCGATCCCTGTTCCTGTTTACGTCCCAGTACCCATGAACCTCTATTCTCAGGCCACGCCCACTTCTTTTGCAATACCTGTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027353:ENSDART00000133469:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=NA C2=0.140
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCCCCTCACCATGACCAA
R:
GCGTGGCCTGAGAATAGAGGT
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]