GgaINT0106901 @ galGal4
Intron Retention
Description
NA
Coordinates
chr1:178289668-178290082:-
Coord C1 exon
chr1:178289953-178290082
Coord A exon
chr1:178289784-178289952
Coord C2 exon
chr1:178289668-178289783
Length
169 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTTCTTTGTTCTTTTAATAGAAG
3' ss Score
7.81
Exon sequences
Seq C1 exon
GGGTCAGCACCACCGCCTTCCCCAACCCCTAACAGAGAGATGAAGAACAAGGCTGTTCTGTGCAAGCCTTTGACAATGACAAAAGCCACGTACTGTAAACCTCATATGCAGACAAAATCTTGTCAGACAG
Seq A exon
GTAACTCCTGAATTGTGCTCAAACCACTAATTTTGTCACCGCAGGTTTCTTTTTAACTGTTATTTTATTGGAAGATATTGCAAATAAGTGATTTCTTCCCCCTAACCTGCAGGTGTAAAATATATCAAAGTTTCTGCAGCATTTACCCTTTTCTTTGTTCTTTTAATAG
Seq C2 exon
AAGATGATTGGAAAAAAGAGTACGTCCCAGTGCCTATTCCTGTACCCATCTATGTCCCGGTGCCTATGAACATGTATAGCCAAACTGTTCCTGTTCCTACGTCGATTCCTGTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017139:ENSGALT00000043420:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.354 A=NA C2=0.128
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCACCACCGCCTTC
R:
AGGAACAGGAATCGACGTAGGA
Band lengths:
244-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]