RnoINT0169115 @ rn6
Intron Retention
Gene
ENSRNOG00000008734 | Zmym2
Description
zinc finger MYM-type containing 2 [Source:RGD Symbol;Acc:1593255]
Coordinates
chr15:37209491-37210920:+
Coord C1 exon
chr15:37209491-37209620
Coord A exon
chr15:37209621-37210804
Coord C2 exon
chr15:37210805-37210920
Length
1184 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
CCCCATGTCTTGTTTTTCAGATG
3' ss Score
11.15
Exon sequences
Seq C1 exon
GGCTCAGCACCACCCCCTTCTCCTACACCAAACAAAGAGATGAAGAACAAAGCGATTCTTTGCAAACCTTTAACAATGACAAAAGCAACTTACTGTAAGCCTCACATGCAGACCAAGTCTTGTCAGACAG
Seq A exon
GTAACGGGGACGTTTGGGTTACACCTCCTCCTACTTAGACCTTACTGCTTTAAAGTGAGTGCTTTTTTTTTTTTCCACTTTTTTTTTTCTTTTTTTTCGGAGCTGGGGACGGAACCCAGGGCCTTGCGCTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCAGTGAGTGCTTTTCTAGAGTGAAACGCTACAGGATCGGCGTGATAGGGCATCATGTCCTTTTCATCTGTGTGACTCTTTTTTTATATTTCCTTGAGAATAAAGCATATTAATCAAATTACTTGTGATCTGTTAGTCAGTGATTAAAGGTCTAGAGTATAACTTGTTAAAAACCACATAATCCTATAAAACTTTTCCTGCACTGATAGCTACAGTTGCGTGTTTCCTGTTGAGAAAATGGTTTCTTTGTGGTCTATAACAATGATAGTTTTGTTTCCTCCTGTTCAGAAAGATATTAAATAATTTAGGTACTTATTTCACATTTGTAACATTAACTATTTCTGTTCTTCATTTCCTTCTGACTTTTTCTTTTGGGATTCTGCCTTGCGGTATAGCTCAGGTTTCCCTTGAATTTAATGCTGTTGAGTACTGGGGTTACAGGAATGGACTGTTGTGCAGCTCCATGTTTGCTGCATTTAATATTTAAGTAAGTAGCCTGAGGGAATTGTCAGGACAGTGTGCTGGATATAGATGTGTACTTTTAAAGGATATATTTTCATTTTTTAAATAAGTGTTAAGTAGTATTCTAAGTTAGAATAGGTGTTGTAGAAAGCTTTTGAAGTTTATCAAATCTTATAGAAACTAGAAAATTCTTTTAAATTAGGACAAAGTTATTTTCTTTTGTTCTTAAGTTGCCAGTTAATATTGTTAATATTAATGTTAATATTGTTTGATGAAATCAGTTAACCAAAGAAACAAAAAGTCATGGTTGGTGGCTGTATGCTTTTAATTGCTCACCTAGGAAGGCAGAAGCAGGGCCATCTATTAAGTTAAGGCCAGCTTGGTCACAAACAAGTTTAAAAACCAAGAGAGTTATTATGGTGGCTCATACCTATATTCTCAGGATGTTGAGACTGAGGCAGGAGGATTGCCAGGTTAAGGCTAGCCTTTATGACATGTTTAATGATTTCTTAAAACCACCCATTGTTCTTTTCCCCATGTCTTGTTTTTCAG
Seq C2 exon
ATGAAAATTGGAAGACAGAGTATGTCCCAGTGCCTATTCCTGTGCCTGTGTATGTCCCTGTGCCTATGCACATGTACAGCCAGAGTATTCCTGTTCCTACCACAGTCCCTGTCCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008734:ENSRNOT00000011684:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCACCACCCCCTTCTC
R:
AGGGACTGTGGTAGGAACA
Band lengths:
238-1422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]