HsaINT0185980 @ hg19
Intron Retention
Gene
ENSG00000121741 | ZMYM2
Description
zinc finger, MYM-type 2 [Source:HGNC Symbol;Acc:12989]
Coordinates
chr13:20632715-20633702:+
Coord C1 exon
chr13:20632715-20632844
Coord A exon
chr13:20632845-20633586
Coord C2 exon
chr13:20633587-20633702
Length
742 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
AATATGTTTTGTGTTTTTAGATG
3' ss Score
8.9
Exon sequences
Seq C1 exon
GGTTCAGCACCACCCCCTTCTCCAACACCTAACAAAGAGATGAAGAACAAAGCAGTTCTTTGCAAACCTTTAACAATGACAAAAGCTACTTACTGTAAACCTCACATGCAGACCAAATCTTGTCAGACAG
Seq A exon
GTAACTTAGGACAATGTGACTTACATACTTCCCCATACCTTCATCTCACCTAATGAAATACATGCTTTTCTTGAATGACACCTCCAGGATAGATTCATTTGGTCAATTTGTCATTTTCTGTTGATTTTGCTTACGTAATTTTAGATATTACCTGGAGAATACAGCATCTCATTTTAAATCATTATGATCAATCTCTGATAAAGGCCTAGAATACAAATTATGTCAAAAGTGAAAAAATACTATCTCGAAAATTTCCTTGGGGATAAGACTACTAAAATTATAATGCTTCCTCTGAGAAAATCATCTCTTTGCATGTGGTTTGTAATGGTAACAGTTCTGTTTCCTTCCTGTCAGAATGAGGTGAAATTGTTCAAATATGTATTTTTTATGAAATTTACAGTGTTACCTGTGTATTCTAATTATTTGATTAAATAAGCCTTTGGGGAGGTTGTTGAGGAGAGTATGGTAGGGTATCTGGAACTACATAGTGTTTTTAAAGGATGTTTTCTTTCTTAAAAAAAAAAAATCCCTAAATTCTATTTGTATTTTCTGTAAGTTAGAACAGCTGCTGCTTTCTTTTTTGTCCTGTTCTTTTTAAGTTACCTAACTTAAAAAAACTGGGAATTAAAAAAAAAAAGGTACTGAGGTAGTTAAATTTTTCTTTATCAAATTATTTTAACATTGAGCACCTGTATATAAGTGTTAGTTAACATTGCTCCTTAAATATGTTTTGTGTTTTTAG
Seq C2 exon
ATGATACTTGGAGGACAGAATATGTTCCAGTGCCTATCCCTGTGCCTGTGTATATCCCAGTTCCTATGCACATGTACAGTCAGAATATTCCTGTTCCTACTACAGTTCCTGTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121741-ZMYM2:NM_003453:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.384 A=NA C2=0.212
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAGCACCACCCCCTTCTC
R:
AGGAACTGTAGTAGGAACAGGA
Band lengths:
238-980
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)