BtaINT0164725 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020403 | ZMYM2
Description
zinc finger MYM-type protein 2 [Source:RefSeq peptide;Acc:NP_001095377]
Coordinates
chr12:36401232-36402180:-
Coord C1 exon
chr12:36402051-36402180
Coord A exon
chr12:36401348-36402050
Coord C2 exon
chr12:36401232-36401347
Length
703 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
ACTGCCTTCTGTGTCCCCAGATG
3' ss Score
12.29
Exon sequences
Seq C1 exon
GGTTCAGCACCACCCCCTTCTCCAACCCCCAACAAGGAGATGAAGAACAAGGCAGTTCTGTGCAAACCTTTGACTATGACCAAGGCGACCTACTGCAAACCCCACATGCAGAGCAAGTCCTGTCAGACAG
Seq A exon
GTGACCCAGGCCCTGCCCTTGAGTGACATCCATAATCTTTTCAGCAGTGGCTTCAGAGTATATTTGTTGGGTTGTTTTGTCACTTTCTGTTGATTTTCTGGTTCTAGACATGCCTTCAGAATACAGCATATCATTTACAGTCATTAATAAAGATCAGTCTCTACAGAGGTGTGCAAGTTATGTCACCAGTGACCTGGTTTCCTTGGGGGCCAGGGCCCACTGAAGTTAAGTGAGCTCCTCTGAGAATACCATCTCTTTGAGTGTGATCTGTAACCATAACTATTCTGTTTCCTTGTCAGAGTGAGTTGAAATCATTCAAACCTGTATTTTCACCAAATTTAAATGTTAGCTGTATTCTGTTGTTTAAGTAAACCTTTTTGAGGGGAGTGTGAGGGGAGTGTGCTGGGGTGTCTGGAACCATATTATATTTCAAAAAATGTTTTCTTTCTTGTTAAAAAACAAGTCTAGGGACTTCCCTGTGGTCCAGGGGTTAGACTCCCCACTTCCACTGCAGAAGCTAAGATTCCCACATGCAGTGCTTTCTATAAGTTAGAATGGCTACTGCATTCAGTTTTGTTGTTTTTAACTTAACTAATTTTGTGAAAACTGGGCATTTTTTAAAATGGGTACTCAGGGCACCCTGAGCAGCTGGGTGGGTGGCGGTTGAGGCTGGTTGCTCCCTGACTGCCTTCTGTGTCCCCAG
Seq C2 exon
ATGGCGACTGGAGGACGGAGTACGTGCCTGTGCCCATCCCTGTGCCTGTGTACATCCCAGTGCCCATGCACATGTACAGCCAGAGCATCCCCGTGCCCACCACCGTGCCTGTGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020403:ENSBTAT00000027190:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCAGCACCACCCCCTT
R:
GGGGATGCTCTGGCTGTACAT
Band lengths:
222-925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development