MmuINT0180464 @ mm10
Intron Retention
Gene
ENSMUSG00000021945 | Zmym2
Description
zinc finger, MYM-type 2 [Source:MGI Symbol;Acc:MGI:1923257]
Coordinates
chr14:56941998-56943368:+
Coord C1 exon
chr14:56941998-56942127
Coord A exon
chr14:56942128-56943252
Coord C2 exon
chr14:56943253-56943368
Length
1125 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CCCTATGTCTTGTTTTTCAGATG
3' ss Score
11.94
Exon sequences
Seq C1 exon
GGCTCAGCACCACCCCCTTCTCCTACACCAAACAAAGAGATGAAGAATAAAGCAATTCTTTGCAAACCTTTAACAATGACAAAAGCAACTTACTGTAAGCCTCACATGCAGACCAAATCTTGTCAGACAG
Seq A exon
GTAAGTTGAGAACTGCTGGATTGCACCTCCTCCTCCTTAGACCACTGATGAAAAAGCCATGCTTTCCTAGAGTGAAGGGCTACGGTAGGTTTGCTAGGGATTGTATCTTTTCATCTATGTGATTCTCTTTTTATATTGTCTTGAGAATGAAGAATATTGATTAAATTGTGATCTGATAGTCAATGATTAAAAGTCTAGAGTCTAACTTGTTAAAAAAAGTCACACAATCCTATAAAACTTTTCCTGGACCGATAGCTACATTTGCATGTTTCCTGTTGAGAAAATGGTTTCTTTGTGGTCTATAACAATGATAGTTTGTTCAGAAAGATATTAAATAATTTATTTAGATACTTGTTTCACATTGCAGCATTAACTGTTTCTGTTCTTCATTTTCTTTTGATATTTTTCTTTTGGGATTCTGTCTTGCTGTATAGCTCAGATTTTTCTTGAATTTAATCCTTTTGCATGCTGGGATTACAGGGTGGACTATTGTGCAGCTCAATGTTTGCTGCATTTTAATAGTTTCAGTAAATAGACTGAGGAGAATTGTCAGGACAGTATGCTGGATATAGAAGTATATTTTTAAAGGATATATTTTAATTTTTTTAAAGAAGTTGTTATGTAGTGTTTGTTCTAAGTTAGAATAGGTGTTGCAGAAATCTTTTTATCAAATCTTGTAGAAACTAGAAATTTCTTATAAATGAGTACAAAGTTATTTTCTTTTGTTGTTAAGTTTCCAGTTATTATTGTTAATATTAATACAGTTAATATTGTTTGTTGAAATCAGTTAACCAAAGACACAAAAAGCCATGTGTAAAAGAAAAAGTCATGCTTTGTGGTTATATGCTTTTAGTTGCTCTCCTAGGAAGACAGAAGCAGAGGCATCTATTAATTTAAGTCCAGTTTGGTCACAAAACAAGTTTAGCCCCCCTCCCCCCCCCCAAAAAAAAAAAACAAAAAAACCAAAACAAACCTATTATGGTGGCTCATACCTGTAAGCTCATGATGTAGGAGACTGAGGCAGGAGGATTGCCACAAGGTTAAGGCCAGCCTTTTTGACATGTTTAATGATTTTTTTTTAAAACAAAACCACATGTTGTTCTTTCCCTATGTCTTGTTTTTCAG
Seq C2 exon
ATGAGAATTGGAAGACAGAGTATGTCCCAGTGCCTATTCCTGTCCCTGTGTATGTCCCTGTGCCTATGCACATGTACAGCCAGAATATTCCTGTTCCGACCACAGTTCCTGTTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021945:ENSMUST00000022511:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.386 A=NA C2=0.199
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCACCACCCCCTTCTC
R:
AGGAACTGTGGTCGGAACA
Band lengths:
238-1363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types