HsaINT0186004 @ hg38
Intron Retention
Gene
ENSG00000147130 | ZMYM3
Description
zinc finger MYM-type containing 3 [Source:HGNC Symbol;Acc:HGNC:13054]
Coordinates
chrX:71245986-71246512:-
Coord C1 exon
chrX:71246353-71246512
Coord A exon
chrX:71246099-71246352
Coord C2 exon
chrX:71245986-71246098
Length
254 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
GACCCCTTTCTTATCCACAGAAG
3' ss Score
9.11
Exon sequences
Seq C1 exon
ATCCCTGTGAAGACCCGATCAGCTCCCACTGCTCCCACCCCTCCACCCCCACCACCCCCAGCAACACCCCGCAAAAACAAGGCTGCCATGTGTAAGCCACTGATGCAGAATCGGGGCGTCTCCTGCAAGGTGGAGATGAAGTCCAAAGGAAGTCAAACAG
Seq A exon
GTGAGCCAGGGTACCTCGATGCCACAGGCTGTATTCCAGAGTCCTAGGCCTGCCAGCCCTATGTCCGTGAGCTGGACAAGGGGATTTCTTAGGTAGCTGAAGCCTCATTCATATGGTTGTCCTAGAATCATAGAGGTGTCTTTCAGCCTTTGATTCAAGGGCAGTTTTGTGACACTGAGCATGTTAGAGCTTTTGGTGGGTCAGATGTGACCAGTCCAGCAGGGTCTCTGAGAAGACCCCTTTCTTATCCACAG
Seq C2 exon
AAGAGTGGAAGCCACAGGTGATCGTGCTGCCCATCCCAGTGCCCATCTTCGTGCCAGTGCCTATGCATCTGTACTGCCAGAAAGTCCCGGTGCCTTTCTCGATGCCTATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147130:ENST00000373998:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.830 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGTGAAGACCCGATCAG
R:
GGGATAGGCATCGAGAAAGGC
Band lengths:
271-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains