MmuINT0180488 @ mm10
Intron Retention
Gene
ENSMUSG00000031310 | Zmym3
Description
zinc finger, MYM-type 3 [Source:MGI Symbol;Acc:MGI:1927231]
Coordinates
chrX:101411845-101412294:-
Coord C1 exon
chrX:101412138-101412294
Coord A exon
chrX:101411958-101412137
Coord C2 exon
chrX:101411845-101411957
Length
180 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
AAGACTTTTCCTGTCTGCAGAAG
3' ss Score
7.35
Exon sequences
Seq C1 exon
ACTCCTGTGAAGAGAGCAACTCCAAGTGTGCCCACTCCTCCACCCCCACCGCCCCCGGCAACACCCCGCAAAAACAAAGCTGCCATGTGTAAGCCGCTGATGCAGAACCGGGGTGTCTCCTGCAAGGCGGAAATGAAGTCCAAAGGAAGTCAGACAG
Seq A exon
GTGGGTGCCACGATACCTCTATTCCACAAACAGGATTCCTGCCTTAGGCAGCTCGCTCTCGATTGGTTGTTGTGCTACTGAATATGTTTAGAGCTTTTGGGGATAACAGATGAGCATCAGGTCCTAGGTCAGATGTTCCTCACCTAGAAAGGGTGCTAACAAGACTTTTCCTGTCTGCAG
Seq C2 exon
AAGAGTGGAAGCCACAAGTGATTGTGCTGCCCATCCCAGTGCCCATATTTGTGCCAGTGCCTATGCATCTATACTGCCAGAAAGTCCCGGTGCCTTTCTCAATGCCTATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031310:ENSMUST00000063577:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.887 A=NA C2=0.105
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGCAACTCCAAGTGTGC
R:
TAGGCATTGAGAAAGGCACCG
Band lengths:
255-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types