RnoINT0169139 @ rn6
Intron Retention
Gene
ENSRNOG00000003707 | Zmym3
Description
zinc finger MYM-type containing 3 [Source:RGD Symbol;Acc:1564967]
Coordinates
chrX:71306427-71306934:-
Coord C1 exon
chrX:71306778-71306934
Coord A exon
chrX:71306540-71306777
Coord C2 exon
chrX:71306427-71306539
Length
238 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AAGATTTTTCTTGTCTGCAGAAG
3' ss Score
7.18
Exon sequences
Seq C1 exon
ATCCCTGTGAAGCGAGTTATTTCAAGTGTGCCCACTCCTCCACCCCCACCACCCCCAGCAACACCCCGAAAAAACAAAGCTGCCATGTGTAAGCCACTGATGCAGAACCGGGGAGTCTCCTGCAAGGTGGAAATGAAGTCCAAAGGAAGTCAGACAG
Seq A exon
GTGAGCGCCATGATACCTTTTTCCACAGACTGTATTCCTACGTCCTAAGCCTCCAGCCTTACATCCAGGAAGTGGATCAGGGCATTCCTTAGGCATCTCTCTCTAGGTCTGTTGAAGGGGCAGTTTTGGGGTACTGAACACATGTGGAGAGCTTTTAGGAATAACAAATGAGCATCAGGTCCTAGGTCAGATGTCCTTCATCTAGCAAGGGTGCTAACAAGATTTTTCTTGTCTGCAG
Seq C2 exon
AAGAGTGGAAGCCACAAGTGATTGTGCTGCCCATCCCAGTGCCCATATTTGTGCCAGTGCCTATGCATCTATACTGCCAGAAAGTCCCGGTGCCTTTCTCAATGCCTATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003707:ENSRNOT00000004972:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.811 A=NA C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTGTGAAGCGAGTTATTTCA
R:
CGGGATAGGCATTGAGAAAGGC
Band lengths:
269-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]