GgaINT0079306 @ galGal3
Intron Retention
Gene
ENSGALG00000016289 | DST
Description
NA
Coordinates
chr3:89835361-89837595:+
Coord C1 exon
chr3:89835361-89835594
Coord A exon
chr3:89835595-89837442
Coord C2 exon
chr3:89837443-89837595
Length
1848 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
TGTATTTGCCTCTAATATAGGAC
3' ss Score
7.23
Exon sequences
Seq C1 exon
AACACCGCTGCAGAGGTTGCTCGTACAAAAATGCAACTGGAGTCCACTGCATTTGATGTTCAGTTCTTCATTTCTGAACATGCCCAGGATCTTTCTCCTAATCAGAGCAAACAGCTTCTGAGGCTCTTAAATACCATTCAGAAATCTTTTCAGGAAGTGCAGGAAACTGTAACATCTCAAGTGGAGAGTTTAGAGACTCAGTTACAGGCAGCGCAAGAGCTGGGTGATCAGAAG
Seq A exon
GTTTGCTTTTCTGTGTAAATGTGTGCTGAGTGTTTTTGTCTATGGGTGAGGAATTTCAATACCGGCATGCAGTATTAAGCGTATTCCTACCTTCTCAGTTTCACTTCAGATACATTCATTATTCTACATAGATTGCATTGATGTGGTGTGGCCCCACCTCGAGCGCTGCATGCAGGTTTGGGTGCCACAGTGTAAGAAGTACATAAAGCTGCTAGTGAGCATCCTAAGGAGAGTTAGAAAGATGGTGAAGGGTCTCGAGGGCAAGGCATATGAGGAGTGTTGAGGTCCCTTGGTGTGTTCAGACCAGAGCAGAGAAGCTGAGGGGAGGCCTCACGGCGGCTGCAGCTCCTCACATGGAGTGGAGGGGCAGCGCTGAGCTCTGCTCTCTGTGACAGCGACAGGGCCCGAGGGAACGGCATGGGGCTGTCAGGGGAGGGGCAGCCGGGGGTTAGGGACAGGGTCTGCACCAGAGGGCGGTGGGCATGGAACAGGCTGCCCAGGGCAGTGGGCACAGCCCCAAGCTGCTGGAGTTCAAGAAGTGTTTGGACAGTGCTCACAGACATTGGGTTTGAATGTTTGGGTGGTCCTGTATAGAGCCAGGAGCTGGACTTCATGATCCTTGTAAGTCCCTTCCAACTCGATATTCTATGATTCTATAAAGTCTGAAGAGTTGTCATTTTTCTCTTTCATTTGTACAATCACAGTTCACAGAAAATATATGTTAGGTTAGGACAGGTACAGTTTCAGGCATTAGGATCTGTTCTTTTACATATTGTCCAAATAGAGCAGTGAACTCTTGTCCTCTTCTGGCTGCAGCTATATTAATCAACAAGTTTACTATCCCACCACTGCTTATCACTCCTATTCTTCTTACAGTTTTCTTTTCCACTGATTTGCTATGTCATCTGCTTGTGTGATCATTTTCTAGGTATTTATGGTCAAGTACCAGATTTGCTTAAATCTTTTTTACCATAGTTTGTTTTGGCTGAGACAGGTTAGAGGGATAGAAATAAGAGTAAATCAGATTTCTGATTGTAGAGGTGGACTTTGGAAAAACCATGAGTCAGGTTGGTACAATTACCTCTTGAGCTGGCATAGCTGCAGCTTGCAAACATAGCCACCTTTGTTTTGATAGGAAAAGAAGGGTAGGATGCTGCTGTATGACTGCATCTCCTCCTTTGTTATAGAAGCACTCTGAAGACTCAGGGTTGCCACCTCATCCACCAGCTTGTGCATAATGAAAGGTGTTTCAGAATTCTGAGGGCTTTGAATTATTTTACCATTTGAAGAAAACTTGCTTCCACTGTACTTTGTCAAGGAAATATAAAATCGAGTAGAGGAAAGACGTAGATATTTTTCTAGGATGTGGTAACAGCAATGTTCTTGCATGTTTTGTTCTTTTCTGTTGCTTAAGAAGTCAGCATTTTCTATTCAGGTAACATATGCATATCAGAAAGAGCTAACTCACAATCACAACTAACCTCTGTTTTGATGTCCTTTTTGCAGAATTAATAGTGTTTACCACAGGTTTCAAGCGGTTAAAGAGACTGGATTTTCACTCCTGTCGTTTGGAGATTTCATCTTTCACATATGTGCATGGCCAGACTTCTCTTGGGCAATTCCATCAAACATGGTCTCTTTTACTTACAACTTATTTGAGGTTTATGCATAACTTCTATGTGTTCATCTTGCTATTTGTACCACTGCTATCATGTTTACAGCATACTTTTAAAAAGATGGCTTTGCGATATTGATGTTCAAAGGTTAATTGCTATTTTGAATGTCTATTAGTTCCTGTAGTGGGAAATTTTTTGTTTTATTGTTCAATTGTATTTGCCTCTAATATAG
Seq C2 exon
GACGTGGCTGAACGGCAGCAAGAATGCAAAGAGAAACTGCAGGAAATATGTGATATGCTTACACAGACTGAAAATCGACTTATTGGACAGCAAGAGTCTCTTCTTATTGGAGACAGCAAGGCTGAGCTAGAACAATACCAGACCAAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289:ENSGALT00000026264:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.245
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTGGAGTCCACTGCATT
R:
GTCTGGTATTGTTCTAGCTCAGCC
Band lengths:
345-2193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]