MmuINT1009139 @ mm10
Intron Retention
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34195828-34197353:+
Coord C1 exon
chr1:34195828-34196061
Coord A exon
chr1:34196062-34197200
Coord C2 exon
chr1:34197201-34197353
Length
1139 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
TTGGGTTTTCTCCATCTTAGGTT
3' ss Score
9.05
Exon sequences
Seq C1 exon
AATGTGCTAGCAGACCTTTCACATACCAAAATGCAGCTGGAAACGACGGCCTTTGACGTACAGTCCTTCATCTCTGATTATGCACAAGATCTGTCTCCCAGCCAAAGCAGACAACTGCTGAGACTCTTAAATACAACCCAGAAGGGTTTTCTTGACCTGCAGGAGCTGGTAACCACTGAGGCGGACCGGTTAGAGGCTCTCCTGCAGCTGGAGCAGGAGCTGGGTCATCAGAAG
Seq A exon
GTTTGCCTCTCTTGCGGAGTTGTGCTCGCTGTTTTACTTATCAGTGTGAAATCGTAACTTAGGTAACCAGGAATACTGACCAGTTAGGGCGGTGCACTGGACAGGCCTGAGCGGGTGCTGAGCAGAATCCCTGCCATGTATTGTGGCAGAGTCTGTCACCTTGATGCTGTCGGGTAGTTGAGGTTTTTCACTGTCCTCTTAACAGTATTTTGTGAGGTGAACGTCTTCATCCTTGCCCTGAAAATGAGAACCAGAAAGCCTTCAGGGGTGTCCAAGAGCAACTGATGAAGGTTTAGCTCTGAACCTTCAGGGAACTATTCCCTCTAGTGAGGCACAGGGCTCAGCTTGTGCTCCAGAGAATGCACTGTAGAGCTGACTTGCCTAAATTTACACCCTGAATGCTCTACTTTATCTGCTTCCTGTGACTTAGAGAAGTTTCGTGCCTTCACTTTGTTTGTTAATAAATTGGGAATGGTAATGTTTATCTGGTAATATTATGAGCGCTGATAAAATAATTCATATGATACCCTTAGCCCTGTGCCTGGCCTCTGCTGAGCTTTTAGTAAGCATGAGCTGTGTGCTGTTGCTGTAAGTGAGGTAGTTAATTTGTTAGGTTTAGTGGATTCTGTTACATAACTGTCTAATAGCAGCAGTGAGCGAAGAACAGAATGTTGGAATAAAAATAATGCATGCAATGTTTCTCTTATTCTTGAAGCATCCAGGCACTGTGTGTAGCATGATAACCTGTATGTACATACCCATATGTTTACTGACAAATCACAACTAACTTCTCTTTTGGTGTCCTTTTGCAGAATTAATTCTGTGTATCACAGGTTTCAAGAGCATAAGAAAATGGGATGTTTCTTCCTGTCGATCCGAAGTTCCATCTCTTACACGTGTGCATGGCCAGTATTCTACTGAGCACCTTCTCTCAAACAGGCTCTTTCTGTGTATACGGGACATGTTCATACTGTCTGTCTGTCTGTCCTTGCTTAGTTTGCACTCCGATGCTACCATGTTTACAGCATACTCAAAAAGCTTTATTCAGGGTGTTTGGCAAGCGTATTCTGATAGGAGGCTCGATGAGAAGTGGATTGAAGGTTGCCCACTGAAAGCATTTTGGGTTTTCTCCATCTTAG
Seq C2 exon
GTTGTGGCAGAGCGTCAGCAAGAGTACAGAGAGAAACTCCAAGGGCTGTGTGATCTCCTCACCCAGACTGAAAACCGCCTAATTAGTAACCAGGAAGCCTTTGTGATTGGAGACGGCACGGTGGAGTTACAGAAGTACCAGTCCAAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131:ENSMUST00000097785:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATGCAGCTGGAAACGACG
R:
CTTCTGTAACTCCACCGTGCC
Band lengths:
342-1481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types