RnoINT0051512 @ rn6
Intron Retention
Gene
ENSRNOG00000012207 | Dst
Description
dystonin [Source:RGD Symbol;Acc:1306566]
Coordinates
chr9:38013538-38014903:-
Coord C1 exon
chr9:38014670-38014903
Coord A exon
chr9:38013691-38014669
Coord C2 exon
chr9:38013538-38013690
Length
979 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
TTGGGTTTTCTCCATCTTAGGTT
3' ss Score
9.05
Exon sequences
Seq C1 exon
AATGTGCTGACAGACCTTTCACACACCAAAGTGCAGCTGGAGACAACGGCCTTTGACATTCAGTCCTTCATCTCCGATTACGCACAAGATCTGTCTCCCAACCAAAGCAGACAGCTGCTGAGACTCCTGAATACAACCCAGAAGTGTTTCCTTGACGTGCAGGAGCTGGTGACCTCTGAGGTGGTCCGGTTAGAAACTCTGCTGCAGCTCGAGCAGGAGCTCGGTCATCAGAAG
Seq A exon
GTTTGCCTTTCTTGTGGAATTGCGCTCACTGTTTTACTTGATCAGTAAATACTGACCAGCTAGGGAGTGCTCTGGACAGGCCGGAACTGGTGCTGAGCAGAATCCCTGACTTACATCAAGGCACGGTCTTTCACCTGGATGCTGTCATGTAGTTGAGTTTTTTCGTTGACCTCTTAACAGTATTCTGCGAGGTGAGAGTCCTCATCCTCTCTGAAAAATGAGATCCAGAAAACATTCAGGAGCATCCAAGAGTCACTGGTGAAAGCTTATCTGGTAGCATTATGAGCACTGATAAGATGATTCATACGAAACCCTTAGCCCTGTCCCTGGCCTCTGCTGAGATTTTAGTAAACATGAGCTGTGTCTACTGTTGCTGTAAGCTAGGTAATAAGAATGTGTGGAATAGGAAAATAGAAATGCAGATTTTGTCTTACGAATCTGTTAGATTTAGTGGATTCTGTTACGGTAGTGTCCGAGGGCAGCAATGAGGGAAGAACATAATGTTGAAGTAAAAATAATGCATGCAATGTTTTCTTTTGCTCTTGAAGCATCCAGGCACTGTGTGTAGCATGATAACCTATATATATACATACATATCCATATGTTTACTGACAAGTCACGACTAACTTCTCTTTTGGTGTCCTTTTGCAGAATTAATTCTATGTGTCGCAGGTTTCAGGAGCTTAAGGAAATGGGATGTTTCTTCCTGTCGATCAGAAGTTCATCTCTTACACTTGTGCATGGCCAGTATTCTACTGAGCGTCTTCACGCGAACAGGCTCTTTTTGTGTATACGGGACATACTCATACCATACTGTCTGTCTGTCCTTCCTCTGTTTGCACTCCAGTGCTATCATGTTTACAGCATACTCAAAAAAGCTTAATGCGGGGTGTTTGGAAAGTGTGTTCTGTTAAGAGGCTAGATCAGAAGGGGGTTGAAAGTTGCCCATTGACGGCGTTTTGGGTTTTCTCCATCTTAG
Seq C2 exon
GTTGTGGCAGAGCGTCAGCAAGAGTACAAAGAGAAACTCCAAGGGCTGTGTGACCTCCTCACCCAGACTGAAAACCGCCTAATTAGTCACCAGGAAACCTTTGTGATTGGAGATGGCACGGTGGAGTTAAAGAAGTACCAGTCCAAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012207:ENSRNOT00000044452:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGACAGACCTTTCACACAC
R:
CCGTGCCATCTCCAATCACAA
Band lengths:
351-1330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]