MmuINT0053579 @ mm9
Intron Retention
Gene
ENSMUSG00000026131 | Dst
Description
dystonin [Source:MGI Symbol;Acc:MGI:104627]
Coordinates
chr1:34243664-34254198:+
Coord C1 exon
chr1:34243664-34243796
Coord A exon
chr1:34243797-34254045
Coord C2 exon
chr1:34254046-34254198
Length
10249 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTGGGTTTTCTCCATCTTAGGTT
3' ss Score
9.05
Exon sequences
Seq C1 exon
ACTGACAGAGGAAGAAAGAAGTGACTTGGAGAAACAGGTGAAAACCCTGCAGGAGGGCTACAATTTATTATTCAGTGAATCTCTGAAACAACAAGAATTACAACCCTCAGGAGAGTCGAAGGTCCCGGAGAAG
Seq A exon
GTAACTCTCCTCACAGATGTGAGGTGTGGCATGGCCAAGAACACATGGTGATGCGCCTTGGGGTTTCTCTGTGGAGAACACGTGGACAGAGTTAGAGGGTTTGGAGGCTTCTGTGTTGTTTATAAAACGCTTTCTTACGTGTGCAGATCATTATCCTGTGCCTTAATCTCTGCCTTGCATGGTGGAAGACGACTCGGTCATCATCTAACGCTTCCTTTCAAAGCCATTCTTTCAATATCATGTTCAGGATTTTATTATAAAATATGGTCAGAAAAGAGCCCATGGGTCATCTCTGCCATTGATAATGCCATGGAGGTTTGTGCTTGTCAGAGATATCCATGAGGGTTATTTTAGTGGTGGGAGGCTATGCCTTAAGGTGAAAATACTCTCACATCTTTTTTTTAAAAAAATAGAAATCACTTAAAAGTTGTCTGGTTCATAGTAATGTGCCCAACACAACGTTTGATAATTAAAGGATGTTTGTCATATTTAACCCCATGACTCTCAGGAACAGTACCACATAATTTGTCATGTTTTGGGGGTACGTAACCAGGTTTTTTGGCTCCCTTAGTCTTTTACTTAACCCTGGAAAAGTCTGTATGCTGTAAACATCAGTAGCATGGAGTGGATGCTCTCTCTGTTGTCACTGGACTCTGAGCTCACTCAGATGCAGGAAGCATGCCTTGCCTTCTGGATATATCTGTGTTCTGTTTCCTCACCGTCAGCAGCTGCCCTTGTGTCCTCACTAACCTCGTTAGTACACGGATGTTCACTTCTCACTTCACAGATGCATGTTGTTTTCAAAGCTTTATCACATCCTGTGCTGTTGAGTAGATCACTGACGTAGGTCACTTGTGCGTTTGAGCTGCCTAACACTCACAAGCTACCTGGGTAAGTAGAGGATCTTTTTTTTTTTTTTTTTTTATGATTAAGTCTATTATTATAAAACAAAGCCACCTGAGCTGCAAGAAATTGCCTCAAGTATCAGACTGACCTGGGCTTTCTGCATTTCCCTTTCAGCCGGATAAAGTGATTGCAGGCACCATCAATCAGACCACTGGAGAGGTCCTGTCTGTCTTTCAGGCAGTTTTAAGAGGCCTTATTGACTATGAAACGGGGATCAGGTTGCTTGAGGCACAGCTAGTGATTACTGGTTTAATTTCACCAGAGTTAAGAAAGTGTTTTGACCTCAGAGATGCTGAAAGCCACGGCCTCATTGATGAACAAGTTCTGCGCCAACTAAAAGAACTAAATCGAGCAAAGCAGCTCATTTCTACTGCATCGCCGACCTCGATCCCCGTGCTTGATTCTCTGGCTCAGGGCATGGTCTCAGAATCCATGGCCATCCGAGTGCTTGAGATACTGCTGTCCGCGGGCCCCCTGCTTGTTCCAGCCACAGGTGAACACCTGACCTTACAACAGGCTTTCCAACAGAACTTGATTTCCTCCGCCTTGTTTTCCAAAGTCCTAGAAAGGCAAGACACTTGCAAAGATCTTATTGACCCGTGCACTTCTGAGAAGGTATCTTTAACTGATATGGTACAAAGGAGTATTTTGCAGGAAAATACCAGGATGTGGCTTTTACCAGTGAGACCGCAGGAAGCTGGCAGAATAACACTGAAGTGTGGAAGAAGCGTTAGCATCCTGAGAGCAGCTCACGAGGGACTCATAGACCGAGAAACCATGTTTAGGCTGTTAGGGGCACAGCTTCTGTCTGGTGGTCTCATCGATTGCAACTCCGGTCAGAAAATGACTGTTGAAGAAGCTGTGGCAGAAGGGGTGATTGACAGAGACACCGCAAGCAGCATCCTCACTTACCAGGTTCAGACGGGTGGAATCGTGCACTCGAACCCTGCTAAGCGACTGACTGTGGACGAAGCAGTACAGTGTGAGTTGATAACTTCCAGCAGCGCGCTGCTGGTTCTGGAGGCTCAGCGGGGCTACGTTGGACTCATCTGGCCCCACTCTGGTGAAATATTTCCCACATCATCTTCCTTACAGCAAGAGTTGATTACAAATGAATTAGCCTCCAAAATTCTGAATGGGAGACAGAAAATCGCTGCTCTCTACATCCCGGAAAGCTCTCAGGTCATTGGTCTGGATGCCGCTAAGCAGCTGGGGATCATAGATAACAACACAGCATCGGTTTTAAAAAGCGTAACGCTGCCAGACAAAATGCCTGATTTAGGAGATTTGGAAGATTGTAAAAATGCCAAGAGGTGGCTCTCTTTTTGTAAACTCCAGCCATCCACAGTTCATGATTACAGGCAAGAAGAGGGTGGTTCTGATGGCGAAGAGCCAGTCACAGCTCAGAGCTCAGAACAAACTAAAAAGTTATTCCTATCCTATTTAATGGTGAACAGCTACATGGATGCACACACCGGCCAGAGGCTTCTGCTCTATGACGGAGACTTGGATGAGGCCGTGGGCATGCTTCTGGAAAGCTGCGGCACAGAACTCGGAGCTGACACGTCCACAAGAGAAAGCCTGTCTGTCCTCACCATCCCTGATGCCTTTCCTGACTGTGCTTTGAGTGAAGAAAAGCACGAGTGTTCGGCTGCAGCAGCTGGGCCTGATAAATGTCATTACAGTCACCCCGGACATAAAGAGTCTCTTGAAAACGCAAAGTGGGACATGAATGAAGCGTTTTGTAAAATGGGAAACAATGATAGCAATGGTGAGTTGCCGCGGCCAGAAAACCTAGCAGATACAACAGTTGTTCAGAAAGGCTCAGAAAGTCCATCTAGAGTGCGTGTCCCCAAACCTACGTCATCTTCAACACAGCCTGAAGGGAGCGTACTCAGACCTGAGTCTGGTAGCATACTTAAAGGCTGTAAAAGTCAAAGTGAGCCTGTTACAAAAAAGTATCCAGATGGAGCTAACCATTCTCATTTTTTGACATCAGAAACCAGTAGACCTTGTGATTCGAATGAAAGAGAGGATGAAGAGAATATACAGAAGGGCCCCTCTGTCTTTGACTATTCCCCCCGGCTGAGTGCCCTGTTAAGCCACGATGAGTTGAGGCAGAGTCAGGGGCGTTTTAGTGATACAAGTACCCCACAGAACACAGGATATTTATGCGAAGCCTCTACTTTGTCACCCAGTGACCAGAGAGTGTTGGCTGATCAGAGCACAAGAGAAAAGTTTCAAGACCAGTTCCTAGGAATCGCAGCTATCAGCGTCAGCCTCCAGGGGGCGCCCTGTGGACAGAAGCCTGTAGATACTGAGTGTAGCAGTTCTCAAGTACACTATCACAGTGAGGAATCCATGTCAGATGCTTCTGCTGAGAGTGGAGCCACTCGGCAGACAGATGAGTCAGAGAAAACTGGGTCTAAGGTGGAAGACAACTCCTGTACCATGGTCCCTGGGGGTGGTTCCCGCAATGACAACACATCAGATTGTGGCCCACTGTCACATAAAGGAGCCATTGATGCTGGTGACTATGAGACGTCACTGCTGGCCGGCCAGCAGAGCGACACGGCAACAGACAGTGACAGTGATGACTATTTCTATGACACCCCCTTGTTTGAAGATGAGGACCATGACTCTCTAATCCTTCAAGGTGACGACCGTGACTGTTTGCAACCCGAGGACTATGACACCTCCTTGCAGGAGGAAAATGACAGGACCCCTCCTCCTGATGACATTTTTTATGATGTTATGAAAGAGAAGGAAAATCCCGAGTTTCCTCATGGAGGAATGGATGAGAGCTTAGGTGTGGAGAACAAAGTATGTTGCCCTCAGGGCTTTCCTGTAGGTATTGAGAAACCTGAGTTGTACTTAGCTGGCGAGAAAGAGTTTAATTCTGGTGGCTCAGAACAGTTAGTGGAGTCTGTGTCTGAAAGTGAGAACCCGCCTGGCCTTTGGGATAGTGAGTCTGACTCGTTGACTGAGGGTGAGATTATAGGAAGGAAAGAGAGGTTAGGAGCTTCGTTAACACCTGATGGTCATTGGAGAGGGGACAGAGAAGAGTGTGACACCAGCCGAGAAAGCCAGTCTGATACCGATGGGGTAGGCTCCATACAAAGTAGCGAAAGCTACAGGCCTTATATGAGCGATGGTAGCGACTTGGATGAGGAAGACAACGGGGGCCGCAGCAGTGAGGACAGTGGAGACGGGCGAGGAGGACAAGGAGTAGCAGATGAGGGTGGAGAGCCCCAGTACCAAGCTGACCCTACCCAGTTGTACACTGCTATCAGGAAAGAACACGGGGGTGAAACCCAAAATGTCAGTGACATGATCCCCCTGGACAAAACGCACAGTTATAGTCCGTTAGAAACGCAGCATGGTGCAGGTGTTTTCCAGCCAGAGTCAGCTGGTAGGGGAGGTTGGGACACAGAAAGAAGCAGCCATCCAGAACTTACCACTGAAGCTGATGAGGAAGACGAAGCAAGTCTGTCCACTCACATGGCAACTAAAGGTGTGTCGCTGTCTAATGCCGAAGGCACTGCCTCAGAAGAAATCAGGTTGGTTCAAGGGCCAGACTCTACAGGCATTCTAAAAGCTGAAGACCTCGAGAATGTATCGCCAGAAATCAGCCCATCTTCTGACAACATTGTCCGTTCTGAAGCTGAGTTAGGAGGAGGAGCTTCTGAGGATGGCCATTTGTCATTTACAGGAAGTGACAGGGATCAGCAGGGACCTGGAAGAGGTCTGGTTAAAGGTAGAGATGGCCAAAGCGATAAGCTGGTAGATGAGACGTCCATTCGGGAAATGGGCTTTCAGAAAGAAGGGGTGTTGATGAGCAGCCCAGAGGAAGGAGGAGAAGAAGAAAGGGATCTCGAACCCTTCCCGAATGGAAGTGCGACAGAGAGCCTCAACATGGGTAAGAGTCAGGTTCCCCCTCTACTGACACACACCGAGGAACTTAGCCACAGAGGGGCTCCGCACACAACAACCATGACAACAACCATGACTCTTGAAGGTGAAGCGAAGAATGTGCAAACGGGGCTTACGGAAAGTCCTGTCCTGCTTGAGACTCTTGCAGAAATATTTGACACCCCAGCTTCTAAAGTGACTCGTGCTGACTTGACTTCAGCTGTAACAGCCTCTGAGATGAAGAGCCAAGTGAAAGAAGACTCCCTCACTGGAGGACCAGAGAAAGAGACTGGTCCGTGTACTTCTTTAGGACATTGTGATAAGTGTATACACGTGGATATGCTGGAACCCAACGAACATACCCCAAGCTGTGCCTTAGTAGCTCCTCCTACCGTGAAAGATAACTTATGCTCTGTAAATAATGCTGGGGAGAAGTCAGTCCGTCCCCAAGAAGACTGGCCTCCAGCTGCCGAGGTCCGGCTAAGTGATGCTTGTGTGGAGGAAAGTATCTCCGAAGGAAAAGCAGGCATTCTCCAGTTCACTCCGGAAAATAGTGACTCCACCCTGTCACGCCTACCTCATCAAAGTGTGGCGGGCTGGGGGAAAAGCGCCGATTCTGTGCAGGCTCGGCTCCCTGTGAGTGGAGTGAGACACACCTCCGCTGACACTTTAGACGTGGGCTGCCCGCAGTTAGAAAGCAGCAGAGAGAAAGCAAGCGCTGAGGAGGAGCCACACAGAGAACGCGCCTTGTCTCTGAAGCCCCAAGAAAGAGAACATCATATGCTTGGGTTCGTAGAAGATGGGAGAAGTATCTTGAAAAGCAGTTTAGACAAAGTTCATATGAATCTCCAGGAAGTGGGAGACCCTTCGGCTGGCACAGGGACGAAAATTTCAATTCAGAACTTAATTAGAAGAGCTATCTTGTCTGAGTTGCCAAATGAAGTTTCGAATGTGCCCAGTCATGGCATTTCCCCCATTAGTAACTCATCAGAAGTAAGGGCAGAGAGTGGAGGTGACCCTTTCTGTATTACAAGTTTTCTTCATCTATTGAAGCAAAACCAACCTCCCCAAGAAACTCCAGGCATCTCTGAGTTAGCTAAAGTATTAACCCAGATGGACTGTGATCCAGAGCAAAGAGGCCTTGGGTCTGAATTACTTCCACCACAACTTAAAAATGCCTTTTACAAGCTGCTGTTTGATGGGTATGCAACTGAAAAAGACCAGGCCGAAGCTTTGGGGCAAACATCATGTGCTGTTCCCAAGATGGCAGAAGAAAAGCCACACGTCTGCAGTGACCTCAGAAACAAAGAAGGACATCACTGTCCCCTGAACCCACAAGCTGTAGGAGAAGCCGAGGTAGAACCCTTCAGTGTGCACATAGCAGCACTGCCAGGAGGTGAGAAGCTCGGAGAACTTTGCAGCGAGCCCCCAGAGCATTCAGAAAGTACATCTGGATCAAAAGAAAGGTCTTCTGACAGTAGCTCGAAGGAAAAAGTGAGTTGACATACGTGGTTTCCCATGACAGTTCCAGTGGGAAACGTGGGAGACAATCTCATACATTTTGTCTGCTTTAAGTTTCTTCCCTAAGGACTGCTAATTACTGTATCCAATCTTGGTTTTAGTGTTCCAATGGCTTGCAACAGTGTTTACAGCATACTGAGAAAATGCATGAATATTTGGTTTTGCTTCAAGATATGAAACCCCCCTTAGACAATCAGGCATCTGTGGAGAGCAGTCTAGAAGCCTTGAAGAGTCAGCTGAAGCAGTTAGAGGTAAGATACCCACTGGCATTCCTGTCAGCTTTCCATCAGCAATCAAGTAAAGCGGGGGTGGGGGTGGGGTTCATTTGGGCCCATGCCTTCAGAGGCTGTAACCTGTGGTCTCTTAGTCCTGTCACATCTGGTTTTGTGGCAAGGCAATTCTTCACTTCAGTCTGAAAGGCAGAAGAAGAAAGGGCAGAGTGCCCCTGGCACCTTTGAGAGTGGACAGCTCCAGGGATCTAACGTCCTCCTACTAAAAGTTTCAATTTCTCCTTTGTAGCACCAAGCCAAGGTTTGAAGTACAGGTCTTGGGGGAGACATCCGGGCCCCAGCTCCAGTAGAGAGTGGTCCATGAATGGTGCTGTTTAATACATAATTTCGCAGAAAGCAGGGTGCCCTTCTCTCTCACTCCTCGTGTTTGGGTTTATGCTTCTTCCTGCGTGGTCAACAGATGCGGGACTGTGTTTGTTTGCAGGCCTTTGAGTTGGGATTGGCCCCCATCGCTGTATTTTTAAGGAAAGATCTAAAGTTGGCAGAAGAATTCTTAAAGTCTTTTCCTAGTGACCTTCCCAGAAGACATCATGAGGAACTGAGCAAAAGCCACCAACGTTTACAGAACGCCTTCTCGTCCCTCAGCAGTGTGTCCTCAGAAAGGATGAAACTGATCAAGCTTGCAATCAACTCTGAAATGGTAGGCATAAAATGGTGAATTCTGGGTAAAATGTGATTGAGAATTAAGCTGTACTATGAGGGTTTTTTAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGTGATTAAAGGCATGCACCACCACACCCAGCGAATTATATTTTTATAGTTCTTAATTCTCCAAACAGAATCACTGTAGGACTTTGAAATTTGGGGGACAAACAGAAATGAATGCATAATTTTGTTTTCTAGTCTAAGCTGGCTGTTCGTCATGAAGACTTCTTACACAAACTTACATCCTATTCAGATTGGGTGTCAGAGAAAAGCAGATCTGTGAAGGCCATTCAAACTGTGAATGTCCAAGATACTGAACTTGTAAAGAACAGTGTGAAGTTTCTTAAGGCGAGTATCAAAATGCACACAACCTGCGGGTCTAGTGTAGGAACTGGTCAGGACAAATACAACCTTCCCGAGACTGTAAGGAATTGTCTTTGACTTAAAGACATGTCTTTCCATAGTCTACCTAATGCTAGAATTTATTCCATCCACCATACCAAATTCTCACTACCTCTGACATACTGACATTTGTATTTATGGGTTTTTTTTTTTTTTTTGCTTTTTTGTTTTTTACCAATGACTTATATAAGCCCAAGATAGCTACAGATTAGTCAAAGTATAGTAGCTTAAGTTGTACTTGTATGGCAATATTGAGCCGAGATTTTTTTTTATGGGTTCTTACTAGAATTGTAGCCTGTTAATTCATATTTTGTGTTCCTTATTGTGAATTACCACAATTGAAGGGATGATGGAAATACTAGCAGTTATTTTGTGCTGTTAATGTCCCTTTGTGATGAATCAAGCTGTTTTGGAATTTTATTTCATTTTATTTAATTTATTTATTTATTTATTTATTTATTTATTTATTTTTGGGCATCTTAAGTATGATCTACCAGGGGAGGAGAGAATGCCCTTGCGGTTATTTATCTTTGCATATTACCTCCCTTCGTATTTAAATGCCTTATTATTGGGATGAAGGGATGGCTTAGTAGATAAAGCGCTTGCCACACTTTATAGGCAAGTGTGAGGATCTGAGTTTAAATCCCTAGACTCTGTGTAAAGTTGGGTCTGGTAACACATATCTGTAGTTACTGATGCTTCTGTGGGGGAAATAGGGGGTGGAGACAGGAGTTGGCAGTTACCATGGTACCTTGTGGCTGACTGGCTAGGAGGAAGCAGTGAACAATGAAAGAGAAGGGCCCAGTCTCAAATAAAGCAGAAGGCAAGAAACAACACCTGAGGTGGTCCTCTGATCTCCACACTGGTGCCCTGGCACACACATGCGCGCACGCGCACACAAACCCACACCACATACACAGATGCAAAATGTGAAAATCACCTATTACCAAATGATGAATAAGTAGATTTTTTTTATGTATACATAAAAAGTATACTCTTATAGTGCTGATAGAAGAATCATATTTAAGTAGTGAGTATACTTCAGTATTTCCAGTGCTGATGAACTTCATCCTCACCTACCTTTCATGCCACCTTCTGATTCTTCACAGAATGTGCTAGCAGACCTTTCACATACCAAAATGCAGCTGGAAACGACGGCCTTTGACGTACAGTCCTTCATCTCTGATTATGCACAAGATCTGTCTCCCAGCCAAAGCAGACAACTGCTGAGACTCTTAAATACAACCCAGAAGGGTTTTCTTGACCTGCAGGAGCTGGTAACCACTGAGGCGGACCGGTTAGAGGCTCTCCTGCAGCTGGAGCAGGAGCTGGGTCATCAGAAGGTTTGCCTCTCTTGCGGAGTTGTGCTCGCTGTTTTACTTATCAGTGTGAAATCGTAACTTAGGTAACCAGGAATACTGACCAGTTAGGGCGGTGCACTGGACAGGCCTGAGCGGGTGCTGAGCAGAATCCCTGCCATGTATTGTGGCAGAGTCTGTCACCTTGATGCTGTCGGGTAGTTGAGGTTTTTCACTGTCCTCTTAACAGTATTTTGTGAGGTGAACGTCTTCATCCTTGCCCTGAAAATGAGAACCAGAAAGCCTTCAGGGGTGTCCAAGAGCAACTGATGAAGGTTTAGCTCTGAACCTTCAGGGAACTATTCCCTCTAGTGAGGCACAGGGCTCAGCTTGTGCTCCAGAGAATGCACTGTAGAGCTGACTTGCCTAAATTTACACCCTGAATGCTCTACTTTATCTGCTTCCTGTGACTTAGAGAAGTTTCGTGCCTTCACTTTGTTTGTTAATAAATTGGGAATGGTAATGTTTATCTGGTAATATTATGAGCGCTGATAAAATAATTCATATGATACCCTTAGCCCTGTGCCTGGCCTCTGCTGAGCTTTTAGTAAGCATGAGCTGTGTGCTGTTGCTGTAAGTGAGGTAGTTAATTTGTTAGGTTTAGTGGATTCTGTTACATAACTGTCTAATAGCAGCAGTGAGCGAAGAACAGAATGTTGGAATAAAAATAATGCATGCAATGTTTCTCTTATTCTTGAAGCATCCAGGCACTGTGTGTAGCATGATAACCTGTATGTACATACCCATATGTTTACTGACAAATCACAACTAACTTCTCTTTTGGTGTCCTTTTGCAGAATTAATTCTGTGTATCACAGGTTTCAAGAGCATAAGAAAATGGGATGTTTCTTCCTGTCGATCCGAAGTTCCATCTCTTACACGTGTGCATGGCCAGTATTCTACTGAGCACCTTCTCTCAAACAGGCTCTTTCTGTGTATACGGGACATGTTCATACTGTCTGTCTGTCTGTCCTTGCTTAGTTTGCACTCCGATGCTACCATGTTTACAGCATACTCAAAAAGCTTTATTCAGGGTGTTTGGCAAGCGTATTCTGATAGGAGGCTCGATGAGAAGTGGATTGAAGGTTGCCCACTGAAAGCATTTTGGGTTTTCTCCATCTTAG
Seq C2 exon
GTTGTGGCAGAGCGTCAGCAAGAGTACAGAGAGAAACTCCAAGGGCTGTGTGATCTCCTCACCCAGACTGAAAACCGCCTAATTAGTAACCAGGAAGCCTTTGTGATTGGAGACGGCACGGTGGAGTTACAGAAGTACCAGTCCAAGCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026131-Dst:NM_133833:35
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.448 A=NA C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: