GgaINT0079306 @ galGal4
Intron Retention
Gene
ENSGALG00000016289 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr3:86443292-86445526:+
Coord C1 exon
chr3:86443292-86443525
Coord A exon
chr3:86443526-86445373
Coord C2 exon
chr3:86445374-86445526
Length
1848 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGC
5' ss Score
5.42
3' ss Seq
TGTATTTGCCTCTAATATAGGAC
3' ss Score
7.23
Exon sequences
Seq C1 exon
AACACCGCTGCAGAGGTTGCTCGTACAAAAATGCAACTGGAGTCCACTGCATTTGATGTTCAGTTCTTCATTTCTGAACATGCCCAGGATCTTTCTCCTAATCAGAGCAAACAGCTTCTGAGGCTCTTAAATACCATTCAGAAATCTTTTCAGGAAGTGCAGGAAACTGTAACATCTCAAGTGGAGAGTTTAGAGACTCAGTTACAGGCAGCGCAAGAGCTGGGTGATCAGAAG
Seq A exon
GTTTGCTTTTCTGTGTAAATGTGTGCTGAGTGTTTTTGTCTATGGGTGAGGAATTTCAATACCGGCATGCAGTATTAAGCGTATTCCTACCTTCTCAGTTTCACTTCAGATACATTCATTATTCTACATAGATTGCATTGATGTGGTGTGGCCCCACCTCGAGCGCTGCATGCAGGTTTGGGTGCCACAGTGTAAGAAGTACATAAAGCTGCTAGTGAGCATCCTAAGGAGAGTTAGAAAGATGGTGAAGGGTCTCGAGGGCAAGGCATATGAGGAGTGTTGAGGTCCCTTGGTGTGTTCAGACCAGAGCAGAGAAGCTGAGGGGAGGCCTCACGGCGGCTGCAGCTCCTCACATGGAGTGGAGGGGCAGCGCTGAGCTCTGCTCTCTGTGACAGCGACAGGGCCCGAGGGAACGGCATGGGGCTGTCAGGGGAGGGGCAGCCGGGGGTTAGGGACAGGGTCTGCACCAGAGGGCGGTGGGCATGGAACAGGCTGCCCAGGGCAGTGGGCACAGCCCCAAGCTGCTGGAGTTCAAGAAGTGTTTGGACAGTGCTCACAGACATTGGGTTTGAATGTTTGGGTGGTCCTGTATAGAGCCAGGAGCTGGACTTCATGATCCTTGTAAGTCCCTTCCAACTCGATATTCTATGATTCTATAAAGTCTGAAGAGTTGTCATTTTTCTCTTTCATTTGTACAATCACAGTTCACAGAAAATATATGTTAGGTTAGGACAGGTACAGTTTCAGGCATTAGGATCTGTTCTTTTACATATTGTCCAAATAGAGCAGTGAACTCTTGTCCTCTTCTGGCTGCAGCTATATTAATCAACAAGTTTACTATCCCACCACTGCTTATCACTCCTATTCTTCTTACAGTTTTCTTTTCCACTGATTTGCTATGTCATCTGCTTGTGTGATCATTTTCTAGGTATTTATGGTCAAGTACCAGATTTGCTTAAATCTTTTTTACCATAGTTTGTTTTGGCTGAGACAGGTTAGAGGGATAGAAATAAGAGTAAATCAGATTTCTGATTGTAGAGGTGGACTTTGGAAAAACCATGAGTCAGGTTGGTACAATTACCTCTTGAGCTGGCATAGCTGCAGCTTGCAAACATAGCCACCTTTGTTTTGATAGGAAAAGAAGGGTAGGATGCTGCTGTATGACTGCATCTCCTCCTTTGTTATAGAAGCACTCTGAAGACTCAGGGTTGCCACCTCATCCACCAGCTTGTGCATAATGAAAGGTGTTTCAGAATTCTGAGGGCTTTGAATTATTTTACCATTTGAAGAAAACTTGCTTCCACTGTACTTTGTCAAGGAAATATAAAATCGAGTAGAGGAAAGACGTAGATATTTTTCTAGGATGTGGTAACAGCAATGTTCTTGCATGTTTTGTTCTTTTCTGTTGCTTAAGAAGTCAGCATTTTCTATTCAGGTAACATATGCATATCAGAAAGAGCTAACTCACAATCACAACTAACCTCTGTTTTGATGTCCTTTTTGCAGAATTAATAGTGTTTACCACAGGTTTCAAGCGGTTAAAGAGACTGGATTTTCACTCCTGTCGTTTGGAGATTTCATCTTTCACATATGTGCATGGCCAGACTTCTCTTGGGCAATTCCATCAAACATGGTCTCTTTTACTTACAACTTATTTGAGGTTTATGCATAACTTCTATGTGTTCATCTTGCTATTTGTACCACTGCTATCATGTTTACAGCATACTTTTAAAAAGATGGCTTTGCGATATTGATGTTCAAAGGTTAATTGCTATTTTGAATGTCTATTAGTTCCTGTAGTGGGAAATTTTTTGTTTTATTGTTCAATTGTATTTGCCTCTAATATAG
Seq C2 exon
GACGTGGCTGAACGGCAGCAAGAATGCAAAGAGAAACTGCAGGAAATATGTGATATGCTTACACAGACTGAAAATCGACTTATTGGACAGCAAGAGTCTCTTCTTATTGGAGACAGCAAGGCTGAGCTAGAACAATACCAGACCAAACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016289:ENSGALT00000026264:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.090 A=NA C2=0.216
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTGGAGTCCACTGCATT
R:
GTCTGGTATTGTTCTAGCTCAGCC
Band lengths:
345-2193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]