GgaINT0081348 @ galGal3
Intron Retention
Gene
ENSGALG00000009382 | CAPN8
Description
NA
Coordinates
chr3:18825368-18833058:+
Coord C1 exon
chr3:18825368-18825437
Coord A exon
chr3:18825438-18832939
Coord C2 exon
chr3:18832940-18833058
Length
7502 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TGGATTATGTGTGTTTGCAGGTG
3' ss Score
9.07
Exon sequences
Seq C1 exon
GAGTTATGTGACAATCCTCAGTTCATAGTCGGAGGAGCTACTCGGACAGATGTTTGCCAAGGAGAGCTGG
Seq A exon
GTAAGTACACTTCTGCATTTTTATTCTTTTTGTTGTTGTTCCAAAACAAGAAGCTTAATTTAAAAATTCCTCATCCCAGTAGGAGTCTCTCCTAAGAGTCAAGGGACACTGAGAAAGTTTTATCCTCTAGCCTAATCATAGAGGATTTTTACTCGGGAGGCTGAGCAAGACCCAGTCCCAGTTTTACACAAAGAAAATAGCTGGTCCCCAAGTGCAGTGGAATTGCCAGGTCACAGCCTGAACCAATGGTTGAGCACCAGGTGAGAAGTCATGCTTAATCCAGGGAGCTCAGGTGCAAGGAATGCACCTGTGTGTTTAGAAGGGGTAGAGCCTGGATCCACCCCTCCTCACCCTCATTTAAGGGTTTTCAGGTAGAGGAGCAGTATCTTTTTGGATGGAGATTGCACTCTCCTTGAGTGTTGTTGGAAAAGGTGAGTCAATTTTCCTTCTTTATTACCTATTATTGCTCTGTAGTGCCTGTATCTTATCTGAAGGAACTATCATAATCTTTTGCCATATGCCAAGGAACAGAGTAGGAACTGGTTTGGCACAGGGACTGGGACTGTGATTTGCCATTTCATGCCGACAGGGATGGTTCATGAGTTAGGAACAAGGAACACATGAAAAAATACTACAAAGCTGATGTGCTCCATTCATGCCATCATAGAATGGCTTGCATGGGAAGGGACTTCAAAGATCATCTAGTTCCAAGCCCCTGCTGCAGGGAGGGTTGCTAGCCCCTAAATCAGCCACTAGACCAAGCTGCCCAGGGCCCCATCTAACCTGGCCTTGACCATCTCCAGGGGTAGGGCATCCACAACTGCTCTGGGCAGCTGTGCCAGCACCTCACAACACTCTCAGTGAAAAATCCACCACAGGCAAGTTTCTCCAAGCCCTTCTTGCTGAATATTCATTCTGTTTGTATGGCACTCGCTGTAGAGCTGCAAGAAGAAATGACTGCACCCAGTATATAAAAACGCCACTGAAAAAGGCAGTGGTGCCCAGCTCTGTGAATTGGGGCCTGATGCTGATGGGATGTCTCAGACAGCAGTCGTGCTCTCCTGGACCCATCATAGTAAAGCCATCCTTTCTACCCATTTTTCTCTAGTGCTTGCCATCATTTAAGTAAAGCTGCTATGCAAATAGCTTTTATCCCCTCTCTGGTAGCTGATGCACTGGCCTCTTCCCTGTTCACCCAGCTGATAAGATCCAGCTGCAGAAGGCAGAAGCAGCAGCATCTCCTGACTGCATATAGAGGCAAAAAGGCTGAAACTCTTGTAATGAGAATTTGATAGATGAGACATGGAAAAATCAGCTTGTCTCCCTTCTGTGATGCTTACTGCAGCACTCCTGACCTCACTGCTCTTCCATCCACTTTGCAGATGAGATTCAAACAATTTCTGCAAGTTGGTGGTGATAAATAATACCAGCGCTGGTCCCGTAAACATAGCACTATTAAAGTGATCACTAAGAAATTCCCTGGTGCATGGGTCTATATTCTAGCTGCTGGAAATAAGATGCCCAATCATATATGTGCTCCGGGATATTTATTTGGTGGATGCCAGGGCAGAGTACAGGGAATCACTTACTGTATTTTAGAAGAATTGTTCAGATAAGTAATAAAAGTGACATTCCTTGTCACTTCCAATTTAGAAAGTTTCTATAATAGCATAAAAAGTCTCCACGACAACCATCCACGTGAAGTAAAACCTTGACAGCTTACAAGCTAGAGGACTGAAGAACATTACCTGCTCTCAGGCTGCCCAGGGAGGTGGTGGAGTCCCTGCTTCTGGAGGGGCTCAATAAATGTGTAGACATGGTACTTATGGACATGCTTTGATGGGCATGGTGGTGATTGATTGGTCAGCAGTTGGACTACATAATCTTGGAGGTCTTTTCCAACCTTAATGATCCTATTTTTATTTGTGTAAAGCCTGGAAACTGGATGCAAATATTCTCAGACCTTTTTTCCATCACCTCCTGGATGACTGTGGATTCCCAGCCCTTTGTGCTAACTGGGCTTTCATTTCACAAGGCAGTATCAAACCCACCAAATAGTGGTGGCAACGGGTCTGGCCAAAGTGGCTCCTGTGCATCTGGGGAGGGGGCTGGCTGCTGGAGCCCAAGTGTGTGTCCTGAAAAATACCCCCCAGACCTGGACAAAAAGCCCCATAATTTGACTATGCTTTTGTTATGAGCTTCCTTTTGACTCTAAAAAGGAGTAAAACTGTTTTAAGAGATCATATTCTCACAAAGGCAGAAAAAACAATGAGGGGATGAATATAACCCCCCTTTGTTTCTGCAAGGCTGTTTACAATCACTTCTGCCTGCTGATTCTTTACAAAAATAAACTTCAGAACAGAGGCAGGGGGCTTACCTCAGTCTGAGCTTAGTGCTCAGGTGTTTGCTTTACATCTCAGAGGCACGTTATGCTTTTTTTTCTGTATTTGATCCAGTCCCTCAAATATCAAAGTGCTTGTTATTAAAGCTGTCATGTGAAACCCTTCTATTGAAACAGACCCTGATTACATATTTACATAAGCCTCGTATGTGACCTGTTAACAAGTCCTTTAGGGAAATAGAGCCTATTTTTAATAATTTTCTGTGACATGTTCCTTTTCTTTTAAAAATAACACTGTAGGTCTGGGTTTACATGAACAAAAGGAACAAGAAAACCCAGAGTCAGTCTCACTCCGTTAAACTTATTTCTTTGACAACGGCATAGGCTAGATGAATATCAGCTTGGGAAGTTTGATGGGAACTTGAAAGACCTGAAATACTTAAAACGTACTTTGAACCATAGCTTTTTGATAGCCTAGTAAGAGCTTGAAATGCACTCATAGACTTTGTTATTAGAGGTGACTTATGAAGTTTCCTTGCAGCTATGTGAATAAGTTAACCACAGGTCTGTTTGCAGAAGGTCTTGAGAAGGAAGTGGCATAAATTTAACTTAACGTAAAGCATACTCAAAAGCCTCTTCATTTTATATAGTTTTCCAGATCTGGACCAGTTATATTCACAGAGCAGCTCTTGTCCTGAAGTCTTAGAACCAGCTCAATAGGTCTGGGCTGCCAGCACAGGTCCCGTGGAGCCAATATGGCTGCCACCAAGGCACTCCAGCTGAGGATCCCCCATGGGTGTCTTGTCTGTGTCTTATCTCACAAGCAGATTAAGGAGGTTACAGGTAGACTGGAGACCAATCTGAAACCTGACACTGATGAATCAGCAACAAGTCAGAATACATTCAGCCCAGAAATACTCCTGTACTGTCTGTTACATCCTGGAATGAGGCACCTGGACTCTTGGCTTAACTTACTCTATCAGTAACCCAATGAAGAGTGCAAATGCTCTGAGTGCGGATGCTTTGATAGTAGCTAAACAGAAACCAAGTGCTGCTCTGTGGCAACTGAAACTCATCAAATTCCTCATTAATTTTATGGCCCCTGTGCTTGCAGTGTGCTTGGGTAAACATCAACACAGAGGAGTTGCACAGCACCCAGGCCAGCAAGGATTCAGCATCCATTGCATTGGCTTGGTTGTCTGTAAACCATGAAGCACCTTTGTGGTGTTGAGAACAGAGGCAATGCAGTGCACGTGTGAGCAAGAAGAGGTTCTAGTTCAAGTACCCTAGTAGTCAAAGTGATGCTTCAAAGCAGGATATGCATGTGTTTTTGTGTATATAAATGTATACATTTATGCACACACAGCTGGTTTTCAAATTCAACCTCTTCACCACAAACTCAAGGTCATAATTGCTCATTTCAAATTAAATAAAATTGGACTTTACAAACATTAGATAGCTTTGGATCCAGGAATCAGGCTCGTTTCTTTTTAGCATGTTCAGCAGTAGCAGCAGTAAACAATGTAATTGGCACTTGTCTGAAACTTTTGTTCATGAAATATGAGACTGAGCAGAAAGCAGTGTATGTGCCTGCAGGTGATTTAGCCTCATAGGGCTAATGCTGAGGAGTTTGTTTCTTTATTTCTAGAAGCTAGAAGGGTACAATCTCAAGCGTATGCTGTGAGCAGGAATGCTTTTTGGTACTGTCGTTTTTCTGACTATAATTGTATTGGAAACACATTCTAGTTACATATTTAATTCATTGATCAGTTGGCCTTGTTTCTTCTCCCTTCCAAAACTTACTTTTTAGGAAAGGAATGAAATGCTTTCCTCGCAATTTGAAAAGTGACTTATAACCTGTAGCTGTATCAGGACAGGTTTTTGTGGTCCTACCTCAGCTGCCTTTCTGGGGATGTTGTACAGCCACGCTGCACTGTAGGCACAGCCACAAACAGAGCTATTAAAGCTGCTGTCAGCAAAACAATGTTGAACTTTGGGAAAAAAAAAAAAAAGGCACACTTAATGGAAACTTGTATTTCAAACAACAAAAACACCACACAACAAAAAACCTAGGAATTTGTCATTGAGAAGAGCTGAGAAACCTTACTAATAAGCACAAATCCCATTGAGCTGTATGAGAAGAAGCAGTTTGTGCAATTTAGTTTTCATCTCGGTTGCTCTTTAATATCAGCTTCTTCTATACTCTTTAATTTGTGTTAAAGCCAGCATCACAGGAATCTGAATGTAATGCATTGCTTGTGTATAAATTGGTTCCAAACCATCGGTATCTGAGCATCCCATGCAAACCTTCCTGTTTTACCAAGTTACTGCACAGCAGCTAATTCCCAGCTGACTCCCTTCAGGGGACATGGTTAATAGCTGTTCTGCCACAGTGTTAGCAAAAGGTGTTAGGCCCCTGAGTAAGGCTTAGAGATAGGACTTTGCATTGCTCAGAGCAGGCAAAGCAATTTTTAAGGCCACGTTCACCACTACAACTCTTCCAATAGAATTCTTCCCAAGCCAGCTTGCCCCTAATGCTCCTCAGGAAGTTGGATTGCATGGTGTGTTTGTGGCAGGCAGGAGTTCCAATGTCTTTCAACCTCTCAGATGCTGGGAAGTTAATTCGTGCTGTAAGAAAGCTGTGAAGGATTTCATGCTGCATTTGGCATCTCACAGGGATGAGATTCTGAAATTGTTCAGTTCTGAGTCAGAGAAGTAAATAACACATTTAAAGAAACCCCTCTCATTTCACTGACTCTTCTGTCTAATTTTGCATCAAACATACACCCTCCTCAGCAAAGCCCACAGCAGTTTCCCTTTCACCAGCTGTAAAAATTGTAACCAGGAAAAAGAAACCCTTCCAGATGTTACATTCTGGGGAAGCACTAACTCCCTGCTACAGAGCTCCTCTGGTCTCACCAGGGTAGAGGGACACAACAGGGACACCAGGAATCCTGCTCTGCCACCTACCTGGAAGCAGCCTTCTGTGCAGCAAAAGAAGCATGGGGAAGTGGGACAAATTAGGTCTGCTGGCCTAACCCTATAAGACTTTTCCTCTTCCTTCTTTGATGACCCACTCCTCAGGCTTACTATGCTATTTCTACATCTACTGGGAAAAATAGAAATTAGAACAGCATAAAGCACACAGCTGTGTACTAGTAAAAGCCTCAGACAAGTGGGTACAAAGCAGGTTGGAATATCCTCAGCCTCATTTTTTCCCCTACCTCTGTTTTCTTGGGAGAGATAATTCTTCAATCTTTTCAACCCCTCCTGAACCCTGCGCTCTCCCCGTTTTATTTATTTCATATGTGGGTATCTAAGGCTAGGAGGAACCTTCCAAGCCAGTGGATTGAGTCCTCTCCTACTGAAAGCAAAGTAATTTTTGAGATAACTGGATTGAAATGAATGTCAAAAGTTTTTTGGTCATAGTCATTTTAGAGGCCGATGCTATTGGACTTTTCTATATACACAGCAGCCACATTTTACAAATTCCACATTAAACATCTTATGACCCTTTTATTCTGATTTAGCCTTCCTCTTTTCTCTCTTTTTTTCCCCCCTCCAAAGTAGCATTTATCCTTTCTCACAGTTCCTCTTCGAACTTCAGTTGTATATGAGGGATAGTACGAGTTTTTTAACCTCTTCTGATAGGAAACGTGGGTGGCTGGGATAAGCAAGTAACCCAGCCATCTTCTACCCCCTTCCAGCTTAAATGTTATTTCCTGAGTGTAGCAGCCAGCATGGCACAGGGCAGTGCCAGGGAAGGCTGTGGAGCCTTTACCTGCTAATGCTATACTTTCCATTGGAAATGCCTGCACCACACACACATTGGTTGGATCAGGGTTTTGCACCTCTATCAAATTAGCCAGCTCAAGTGGCTACAGGTTGTTACAGGAGAGGGGGGGGGAACTTCTTCACAGGTGTTTCTCAACTCTGTCTGACTGGGAGCAGCTGCTTCTGGCTTAGCTCATAGGAGGCACCTGGGTACCTCCCAGTGGGGTACAAAGGGCACAGAAACCATAAAGCACTGGGCAAGTTCTAGAATATCATCTTTAGAATTATAGTAATTGTGGTACTGAAACAAAAAGCCCAAGTCAATATAACAAGTTAACTATCGCTTTAAGATGTTAATTCATGATACAGATTAAACTTTCTTTGGTTTCTCCATTAGTTTACTTTCAATATAGTAAGAGTTATTATGCCAGTTTGCTCTGCAATATATGCATCTAGGCAAAGAAACTGTGTCTTGACACAGATAACCCATGGGGAACCAGGACAGTTTTAGCACTCTTGGAGCAATTTTGTTTTCTAAGGCTTTGAGCAGACCTCAGAAATTAACACTGAAGCCACAAAAGTGCTTCCTGCTCTTTGTGATAAGCATATATACTAAGAAATCCATGGATCTCTGAGTTCCCCAGAAGCATGTGAAGGTTTTAATCTACCCAACACAACAAGAAAACTACTCAGCAAACAGCTGTAAGACACCCACCCTCTACTAAGGGCCCACGCCCCTCCTTTTCAGGATAAGCAATGAGCCAAAGAAAGGGCTCACCTGCTTCCAGAGTTCCTACTGCGCTTCTGTTTTCATCTGACTCACAAGTAGAGCTGAAGTCATAATCCTAAGAGCTGGTTCAAGTCCAGACCTTCTAAGAAAGGGCTAAAATATATGTACATGTATACGTACATATGCCTCTGCTTCTCCCAGGTGCATTGGCTTGGGGCTAGTTGAGGTAGCACAGGTCATTAACTCCCTGCTGCTCAGCCAGGCTTTGCAACCCACAAACCCAGATTTCCTTTGCCTTGGCTCTGCTCTTGGTCTCCTGAAGGTATTAAAAATCTCAACTAAAATAGCCTGCTTTCAGAGCTTCATTTAAAAATCAAAACAGTATAGCTCAAGTTAGACCACTAAAATTACCACTGTGCTCAGTGGTGTCCTGCAATACCTATGTGGTCTGGGTGAGTGGAAAATGAGCAAAAGAGAAACAACATGATGCAGCGAGAATGAATTGCTGAACCAACATTGAATCTGGCAGGACCTTGCAGAGCACTTAATGCTGGTGCTTTGATCTACATGGGAATGTGATATACTGGTGTAGGGATCTGCTCAACAAGACGTTATTTATTAATACACTTTTCTGCTGTGGATTATGTGTGTTTGCAG
Seq C2 exon
GTGACTGCTGGCTCCTGGCTGCCATTGCATCTCTGACTTTGAATCCAGATGTTCTTCACCAAGTTGTTCCCAAGGCTCAGAGTTTTCAGGAGAACTATGCTGGGATCTTTCATTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009382:ENSGALT00000015288:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.2=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(13.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]