GgaINT0081776 @ galGal3
Intron Retention
Gene
ENSGALG00000014463 | ACTN2_CHICK
Description
NA
Coordinates
chr3:39148659-39149837:-
Coord C1 exon
chr3:39149751-39149837
Coord A exon
chr3:39148747-39149750
Coord C2 exon
chr3:39148659-39148746
Length
1004 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CACTCTGGTGTCTGTTACAGAGA
3' ss Score
9.37
Exon sequences
Seq C1 exon
AAATTGTTGATGGCAATGTGAAAATGACACTGGGTATGATCTGGACCATCATCCTTCGCTTTGCTATTCAAGATATTTCAGTGGAAG
Seq A exon
GTAAGTGTAACGCTACCATGTTAACCAGGAAATTTGTTTTAAAATTTTATTAAATAGATAGTATACAAGTGCGATGAATGTTTTAAGAAAGAATTCTTTTTTCACAGAAAGTGATATGCCTCTCTTGTGACAAAATACATTTCTGGAGGGAAGAAATAACTACTATAATGGAGAAGTTCTGGGCATGTTTCTCAGTTACAAGAGAGACAGAAACAAGTCTATGTTCATGAGTTTCAGTGGCCTGAATCTATGCTGTATTCTGTGTGGTTGTCCTATTTCCAAAATGCTTTTCTAGACCTGTGCATTTCAACCCTTTTCGCAGATATATCTGGTGAAATTATATCTTTCTAGCATGTTTTTTTCTTCTGCTTCAGGCTTTTTTCTTAACTTTCACTTGGTAACTGTCTCCAAAAAGTGCATTGTTGTTACAGTATTCTATAAAACAAGTCTAGCCCATGAAAAGTCTAAATTTCTAGAAACTAATCTCAGTTTTCAGCAGAAGTAGTGTCGATTCAAGGTTAGCATGCTGTCCTGGCTATAATTTGTTGAATGTTAACTGTAGACCTAGAAGTCTCATTGACTCAGATGCTTACAGTGTGCAAATAACGAAGATAATTTATTTAGAATTTATTCTTTTACATAAGCAAATAGACTGAGAGCACAAGCGTGTTTCATGTAGGCACCAACTGAATTTTTTATGCTTAGTTCTATTACATTTGTATTCAATGTTTTACTCCAAGTATACTTTCTGCTGTCCAATTAATGTAATTTCTTAAACTCCTAATATTCCAGAAATACTATGCAGACTAGGACTCTGAGTTGTTCCATTTGAGCTGATGTCTCTGTCCTGATGGAGCCTCTCTAGTCCACTTGCATGACTATCTCTTAGGATTAAATGTTAGTTTATGCTAACCAGTTTTTGATGAATGTCCACCATTAAGATGAGAAGAAAAGAATTACTTGAGCTCTTTTTACATCTTCTTACACTCTGGTGTCTGTTACAG
Seq C2 exon
AGACCTCTGCCAAAGAAGGGCTGCTGCTGTGGTGTCAAAGAAAAACTGCTCCTTACAGAAATGTGAACATTCAGAACTTCCATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463:ENSGALT00000023354:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(20.6=70.0)
A:
NA
C2:
PF0030726=CH=PU(24.0=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]