GgaINT0081776 @ galGal4
Intron Retention
Gene
ENSGALG00000014463 | ACTN2
Description
Alpha-actinin-2 [Source:UniProtKB/Swiss-Prot;Acc:P20111]
Coordinates
chr3:36983842-36985020:-
Coord C1 exon
chr3:36984934-36985020
Coord A exon
chr3:36983930-36984933
Coord C2 exon
chr3:36983842-36983929
Length
1004 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CACTCTGGTGTCTGTTACAGAGA
3' ss Score
9.37
Exon sequences
Seq C1 exon
AAATTGTTGATGGCAATGTGAAAATGACACTGGGTATGATCTGGACCATCATCCTTCGCTTTGCTATTCAAGATATTTCAGTGGAAG
Seq A exon
GTAAGTGTAACGCTACCATGTTAACCAGGAAATTTGTTTTAAAATTTTATTAAATAGATAGTATACAAGTGCGATGAATGTTTTAAGAAAGAATTCTTTTTTCACAGAAAGTGATATGCCTCTCTTGTGACAAAATACATTTCTGGAGGGAAGAAATAACTACTATAATGGAGAAGTTCTGGGCATGTTTCTCAGTTACAAGAGAGACAGAAACAAGTCTATGTTCATGAGTTTCAGTGGCCTGAATCTATGCTGTATTCTGTGTGGTTGTCCTATTTCCAAAATGCTTTTCTAGACCTGTGCATTTCAACCCTTTTCGCAGATATATCTGGTGAAATTATATCTTTCTAGCATGTTTTTTTCTTCTGCTTCAGGCTTTTTTCTTAACTTTCACTTGGTAACTGTCTCCAAAAAGTGCATTGTTGTTACAGTATTCTATAAAACAAGTCTAGCCCATGAAAAGTCTAAATTTCTAGAAACTAATCTCAGTTTTCAGCAGAAGTAGTGTCGATTCAAGGTTAGCATGCTGTCCTGGCTATAATTTGTTGAATGTTAACTGTAGACCTAGAAGTCTCATTGACTCAGATGCTTAGAGTGTGCAAATAACGAAGATAATTTATTTAGAATTTATTCTTTTACATAAGCAAATAGACTGAGAGCACAAGCGTGTTTCATGTAGGCACCAACTGAATTTTTTATGCTTAGTTCTATTACATTTGTATTCAATGTTTTACTCCAAGTATACTTTCTGCTGTCCAATTAATGTAATTTCTTAAACTCCTAATATTCCAGAAATACTATGCAGACTAGGACTCTGAGTTGTTCCATTTGAGCTGATGTCTCTGTCCTGATGGAGCCTCTCTAGTCCACTTGCATGACTATCTCTTAGGATTAAATGTTAGTTTATGCTAACCAGTTTTTGATGAATGTCCACCATTAAGATGAGAAGAAAAGAATTACTTGAGCTCTTTTTACATCTTCTTACACTCTGGTGTCTGTTACAG
Seq C2 exon
AGACCTCTGCCAAAGAAGGGCTGCTGCTGTGGTGTCAAAGAAAAACTGCTCCTTACAGAAATGTGAACATTCAGAACTTCCATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014463:ENSGALT00000023354:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(20.6=70.0)
A:
NA
C2:
PF0030726=CH=PU(24.0=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]