RnoINT0012620 @ rn6
Intron Retention
Gene
ENSRNOG00000017833 | Actn2
Description
actinin alpha 2 [Source:RGD Symbol;Acc:1308097]
Coordinates
chr17:66339622-66342311:-
Coord C1 exon
chr17:66342225-66342311
Coord A exon
chr17:66339710-66342224
Coord C2 exon
chr17:66339622-66339709
Length
2515 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TTTTCTTGTTGTCACTGTAGAAA
3' ss Score
7.98
Exon sequences
Seq C1 exon
AAATCGTCGATGGCAATGTGAAGATGACCCTGGGTATGATCTGGACCATCATCCTCCGCTTCGCCATTCAGGACATCTCAGTGGAAG
Seq A exon
GTAAAATTCATGGATGGCGGTCCAAGCTGCCTAATTCGGAAATTGAGCTTATAAATTGAATTTTGAGTAGGATATTGTGACTTTGAACAGTCACTTGCACGATCAAATGAGAGGCATCTGGGTTGAGTTTTCATTATATTTATATGGGAAAATACCCATGGCAGCGCTGTTCTATTCTTGGGGTGGAATCACTTTGCAAAGAGATGAACACACGTTCCGAGCAGACGGTGTCTTAACATAGGTTTCTACTGCATACTGTACTGGGGATGTTCTCGAATGTGCTAATGAAATAGGCAGAGGGTTTTCTTTCTTTGTATTCTCTATCCTTTCTTCCTCCCTCCTCCTTCCTCCCTTCTTCCTCTTCCCCTCCCTTCCTCTTCCCCCCTCTTCCCTCCCTATTTCTTCCTTCCTTCTCTTCTCGCCTTGACGGTGGGAGTAAACTGCAGGGCCCTTGCACCATGCAAGACACTTTCACACCAGTAGCGGCGGATGCGCCCGTCAACCGCGGCGCGGGCGGACGGCAGAGAGGTTCTTTAGGCTTACAGCCAGAACACTTTAGTTCTATTAATACTAATAATAAAAGTTGGACGAGGTGGTTGACACCTATAAGCCTAGCACTCAGGAAGTTAAGACAAGAGGATCACAAGTTTGAAAACACCTCAGGCTTCATAGTCTGACCATCCAGTCCTATGTTGTCCCTGTTTCACCCCTAAAACATTCTTTACATTCCCTCCAAAAAAGGAAGAGAAAGAAAAAGGGGAAAAAAAACCCAAAAACCAAGATTTCCTAGCTCAGCCACAGAGCCTTCAAAATAGTGAGCTCTACAAAGTGGGTTTAACTGTTTAGGTATTTAAATTTAGTGGGTAAAAACTGACACAATTATGACAAATTACTGTTTTTTGATAACTTGGGAACCTTTAGGAAGCATCCTGTTATTTTCATTAGCATGAAGAAATGCACTGTAATAGAACCACGTTGTGCAGGAGTTTTCAAATGTAGACCGTGTGCTCTTCAAACTGGCTGTCATTTCTGAGCCCGGATTGAGGTTTAAATGTCATTACATCTCGGTTTGATGTTTTAGATGACATAAATGGGTTTGGTGTTCTAAAAATGGAATCACTTAAGTGAATTAGAAAGTTCTCTAAGGGCACATGCTGCGGGCTTCTTGTCACCCAGTACAGTAAGCAGGGAAGTGGCTTGTTAAAAAGATTTATTTTAGTTTTAATTACATATATGCATGTGCCTGTGAGTGCAGGTGTTCTTGGAGGACAGAAGAGAAAGTCAGATTCCCTGGTGCTGGAATTATAAGTAGTTATGAGCTGCCCAACATGGGTGCTGGCAACTGAAACAGATACACTCTTTCTGAGCAGTGTCAACACTTGACTACTGAGCCTGCTCTTCTGCCCAGCCCCAGTGGGAGGGTCTTAATGATTGACTACTGAGCCTGCTCTTCTGTCCAGCCCCAGTGGGCGGGTCTTAATGATTGCTGGCTGAGGAGTCACTAACACCACCAGGAAGACTAACGTCGGAGTCTCTTCGGTCCTGGGAAGACACAAACACCCAACTTCTCCACACTCAAGTTTCACCACTCAGGCTAGGTTAGCCTTTGGTGACCAAGTTAAGGGAGGCTGACTAATTGGCAGCCCATCTTGCCCTTTAACCTATTCAGCATGCTATGGTTTGAGAGATGATAAACAGACACTTCTAATTCTCAGGATGTCAAGTGTGTCAACAGCACTAAATTTGGATTTATTTGCAAGAGGTGCTCCTGAGATGACTTAGTGGGCAGGCCTAGCCTGACAAGCCGAGTTGGATTTCTGGGACCCACAAGGTGGAAAAAGAGTACAGACTCCTGAAAATTGTCCCCTGGCCTCCACACGTGTGCTCAAAAATATTTAAGAAAAAGATTTAATTCTACTGATCAAACAGTTGTTAGGCTAAAAGGCACAGTAATAAATTTATTAAGGAAAAAAAGGCAGTAATAATGAGGGGGCCAAGACAGGGAAGGAGGGGTGTAACAGGCACACGGCAACAGCACATACTGATAAACACGAGTGTTTTGTTTAGAGTTGGGGGTGACCTAGGGTTGCTCTTGCCCTCTGCTGAGGAGGGGATTATATGAAATCCAGCAAATCTTCCTTCAATCAGTATTAAAGGGGTGAACTTAATTTTTTCCCCAGCTGGTTGTTTATTATTTGGTTTTTGTTGTTGTTGTTGTTTGGGGTTTTTTTTTTTTGTATTTTTGTTGTTATTTGGTTTTTCCGTTGCTAGACATTGACCTTAGGGCCACAGGAGCACTAACTAGGCAAGCACTGTACTCCTGAGCTACATCCCACAGTCCTGGTTATAATTTTGTAATTAGTGTAAGGGAATTTAAAATTTAATTTCTATCAGATGTACTATGAGAATGGCATTGTCTGTTTCCCCTATATCCAAAATAAAATAACCTTTTTTTTTTGAGCACACCCTCACTCACTCCCCACCACCCACAGACCTTTTCTTGTTGTCACTGTAG
Seq C2 exon
AAACATCTGCCAAAGAGGGCCTGCTGCTATGGTGTCAGAGGAAGACAGCACCATACCGAAATGTGAACATCCAGAACTTCCACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017833:ENSRNOT00000024098:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0030726=CH=PD(20.6=70.0)
A:
NA
C2:
PF0030726=CH=PU(24.0=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]